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Genatlas specifications

Information


Unique identifier OMICS_18232
Name Genatlas
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Jean Frezal

Publication for Genatlas

Genatlas citations

 (7)
library_books

DTNI: a novel toxicogenomics data analysis tool for identifying the molecular mechanisms underlying the adverse effects of toxic compounds

2016
PMCID: 5429357
PMID: 28032149
DOI: 10.1007/s00204-016-1922-5

[…] ty of the individual genes in the inferred networks was extracted from the GeneCards database (http://www.genecards.org). GeneCards (Safran et al. ) provides information on the function of genes from Genatlas (Frezal ) and UniProtKB (The_UniProt_Consortium ). Over-representation analysis in CPDB was performed on the list of nodes of the inferred networks and their subnetworks to obtain an overview […]

library_books

Comprehensive genetic testing for primary immunodeficiency disorders in a tertiary hospital: 10 year experience in Auckland, New Zealand

2016
PMCID: 5142146
PMID: 27980540
DOI: 10.1186/s13223-016-0169-2

[…] have thus maintained a close working relationship with requesting clinicians, which has obviated the need for testing algorithms.Reference gene sequences are downloaded from public databases such as Genatlas and Ensembl. Intronic primers flanking exon regions are designed using Oligo version 6.44 (Molecular Biology Insights, Cascade, CO, USA) or Primer3 (SimGene.com). Primer sequences are also ob […]

library_books

The Disease Portals, disease–gene annotation and the RGD disease ontology at the Rat Genome Database

2016
PMCID: 4805243
PMID: 27009807
DOI: 10.1093/database/baw034

[…] ed terms, such as Phenopedia (https://phgkb.cdc.gov/HuGENavigator/startPagePhenoPedia.do), GeneCards (http://www.genecards.org), Genetic Association Database (http://geneticassociationdb.nih.gov) and Genatlas (http://genatlas.medecine.univ-paris5.fr/imagine/home.php). Databases dedicated to the disease in question are located with internet searches. Retrieved gene lists from all sources are transf […]

library_books

Hierarchical Clustering of Breast Cancer Methylomes Revealed Differentially Methylated and Expressed Breast Cancer Genes

2015
PLoS One
PMCID: 4338251
PMID: 25706888
DOI: 10.1371/journal.pone.0118453

[…] ation and RNA-seq data of TCGA breast invasive carcinoma (BRCA) dataset were obtained from the TCGA Data Portal (https://tcga-data.nci.nih.gov/tcga/) (). The fragile sites data were obtained from the GENATLAS database (http://www.dsi.univ-paris5.fr/genatlas/). The CrossMap (v0.1.4) tool was used to convert hg19 coordinates in the BED and Wig files to hg18 coordinates and to perform format conversi […]

library_books

GeneSense: a new approach for human gene annotation integrated with protein protein interaction networks

2014
Sci Rep
PMCID: 3966033
PMID: 24667292
DOI: 10.1038/srep04474

[…] in the references to provide active links to articles that first described the gene in question or that are particularly relevant to the nomenclature of the gene. Additional links such as GeneCards, GENATLAS, GOPubmed and H-InvDB are included in GeneSense based on HGNC. KEGG information is used for pathway analysis in GeneSense. The threads of basic protein-protein interaction information fetched […]

library_books

Ontology Based Querying with Bio2RDF’s Linked Open Data

2013
J Biomed Semantics
PMCID: 3632999
PMID: 23735196
DOI: 10.1186/2041-1480-4-S1-S1

[…] mical Entities of Biological Interest (chebi), Comparative Toxicogenomics Database (ctd), NLM’s DailyMed (dailymed), Health Canada Drug Product Database (dpd), DrugBank (drugbank), Ensembl (ensembl), GenAtlas (genatlas), NCBI Gene (geneid), PDB Heteroatom Vocabulary (het), Database of Human Unidentified Gene-Encoded Large Proteins Analyzed (huge), Human CYC (humancyc), International Union of Pharm […]

Citations

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Genatlas institution(s)
Service de génétique médicale, hôpital des Enfants-malades, Paris, France

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