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GenCLiP specifications
Information
| Unique identifier | OMICS_03940 |
|---|---|
| Name | GenCLiP |
| Interface | Web user interface |
| Restrictions to use | None |
| Computer skills | Basic |
| Version | 3.0 |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Jia-Hong Wang
Publications for GenCLiP
GenCLiP 2.0: a web server for functional clustering of genes and construction of molecular networks based on free terms.
GenCLiP citations
(6)Low concentration trifluoperazine promotes proliferation and reduces calcium dependent apoptosis in glioma cells
[…] ere were 643 upregulated and 538 downregulated genes in SWOZ2-BCNU cells. The volcano plots of differentially expressed genes are shown in Fig. . These differentially expressed genes were analysed by GenCliP 2.0 software to annotate gene functions. Sorting by the negative value of the log (p-value) of GO analysis is shown in Fig. . The top-ranking terms were related to apoptosis and programmed cel […]
Analysis of Microarray Identified Genes and MicroRNAs Associated with Idiopathic Pulmonary Fibrosis
[…] ndicate that the DE-miRNAs and DEGs described above may act in concert to participate in IPF. A total of 15 DE-miRNAs and 11 DEGs involved in this microRNA-target relationship have been identified by GenCLip 2.0 to be associated with cell differentiation, signal transduction, mesenchymal stem cells, extracellular matrix, cell migration, and apoptosis. At the same time, we analyzed the 67 DEGs in o […]
Comparative profiling between primary colorectal carcinomas and metastases identifies heterogeneity on drug resistance
[…] ug resistant ability enhancing. Perhaps this explains in part why the lower remission and higher recurrent were happened to patients with metastasis after chemotherapy treatment.Analysis results from GenCLiP 2.0 suggested that WNT pathway was involved in aberrant signaling pathways between metastatic and primary CRC, as well as between SW480 and SW620 cells. The main oncoprotein in colorectal canc […]
Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues
[…] es. Thirdly, the functions and annotations of the genes were searched in Ensembl and NCBI, if no available description or gene information were identified, the biomedical literature was searched with GenCLiP 2.0 (). When multiple biomedical functions were listed, functions related to gastrointestinal activity were prioritized for annotation. Fourthly, for a subset of genes Unigene (), Genevestigat […]
The expression of CXCL13 and its relation to unfavorable clinical characteristics in young breast cancer
[…] rentially expressed genes between young and older breast cancer tissues. Delta was set to 0.6, and the threshold of FDR was set to 0.182. The differentially expressed genes were further analyzed with GenCLiP on-line software [, ] (http://ci.smu.edu.cn) to annotate gene functions and perform KEGG Pathway analysis. […]
SENT: semantic features in text
[…] Other tools that enable literature-based knowledge discovery include GenCLiP () and FAUN (). GenCLiP is a Windows application that offers clustering of genes and terms based on the literature. It also generates gene networks based on co-occurrence of genes in the liter […]
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