GenCLiP statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GenCLiP
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Tool usage distribution map

This map represents all the scientific publications referring to GenCLiP per scientific context
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Associated diseases

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GenCLiP specifications

Information


Unique identifier OMICS_03940
Name GenCLiP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jia-Hong Wang

Publications for GenCLiP

GenCLiP citations

 (6)
library_books

Low concentration trifluoperazine promotes proliferation and reduces calcium dependent apoptosis in glioma cells

2018
Sci Rep
PMCID: 5773581
PMID: 29348654
DOI: 10.1038/s41598-018-19413-y

[…] ere were 643 upregulated and 538 downregulated genes in SWOZ2-BCNU cells. The volcano plots of differentially expressed genes are shown in Fig. . These differentially expressed genes were analysed by GenCliP 2.0 software to annotate gene functions. Sorting by the negative value of the log (p-value) of GO analysis is shown in Fig. . The top-ranking terms were related to apoptosis and programmed cel […]

library_books

Analysis of Microarray Identified Genes and MicroRNAs Associated with Idiopathic Pulmonary Fibrosis

2017
PMCID: 5446886
PMID: 28588348
DOI: 10.1155/2017/1804240

[…] ndicate that the DE-miRNAs and DEGs described above may act in concert to participate in IPF. A total of 15 DE-miRNAs and 11 DEGs involved in this microRNA-target relationship have been identified by GenCLip 2.0 to be associated with cell differentiation, signal transduction, mesenchymal stem cells, extracellular matrix, cell migration, and apoptosis. At the same time, we analyzed the 67 DEGs in o […]

library_books

Comparative profiling between primary colorectal carcinomas and metastases identifies heterogeneity on drug resistance

2016
Oncotarget
PMCID: 5325415
PMID: 27613840
DOI: 10.18632/oncotarget.11570

[…] ug resistant ability enhancing. Perhaps this explains in part why the lower remission and higher recurrent were happened to patients with metastasis after chemotherapy treatment.Analysis results from GenCLiP 2.0 suggested that WNT pathway was involved in aberrant signaling pathways between metastatic and primary CRC, as well as between SW480 and SW620 cells. The main oncoprotein in colorectal canc […]

library_books

Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues

2016
PeerJ
PMCID: 4793311
PMID: 26989612
DOI: 10.7717/peerj.1762

[…] es. Thirdly, the functions and annotations of the genes were searched in Ensembl and NCBI, if no available description or gene information were identified, the biomedical literature was searched with GenCLiP 2.0 (). When multiple biomedical functions were listed, functions related to gastrointestinal activity were prioritized for annotation. Fourthly, for a subset of genes Unigene (), Genevestigat […]

library_books

The expression of CXCL13 and its relation to unfavorable clinical characteristics in young breast cancer

2015
J Transl Med
PMCID: 4471911
PMID: 25990390
DOI: 10.1186/s12967-015-0521-1

[…] rentially expressed genes between young and older breast cancer tissues. Delta was set to 0.6, and the threshold of FDR was set to 0.182. The differentially expressed genes were further analyzed with GenCLiP on-line software [, ] (http://ci.smu.edu.cn) to annotate gene functions and perform KEGG Pathway analysis. […]

library_books

SENT: semantic features in text

2009
Nucleic Acids Res
PMCID: 2703940
PMID: 19458159
DOI: 10.1093/nar/gkp392

[…] Other tools that enable literature-based knowledge discovery include GenCLiP () and FAUN (). GenCLiP is a Windows application that offers clustering of genes and terms based on the literature. It also generates gene networks based on co-occurrence of genes in the liter […]


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GenCLiP institution(s)
Cancer Institute, Key Laboratory of Zebrafish Modeling and Drug Screening for Human Diseases of Guangdong Higher Education Institutes, Department of Cell Biology, Southern Medical University, Guangzhou, Guangzhou Biotechnology Center, Guangzhou, School of Basic Medical Sciences, Network Center and Department of Plastic Surgery, Nanfang Hospital, Southern Medical University, Guangzhou, China

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