Gencore statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Gencore

Tool usage distribution map

This map represents all the scientific publications referring to Gencore per scientific context
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Associated diseases


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Gencore specifications


Unique identifier OMICS_33308
Name Gencore
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A sorted file with its corresponding reference file.
Input format FASTA+BAM,SAM
Output data A summary of the data before and after processing with metrics and a duplication level histogram.
Output format JSON+SAM,BAM
Operating system Unix/Linux
Programming languages C++
License MIT License
Computer skills Advanced
Version 0.10.0
Stability Stable
Maintained Yes




No version available



  • person_outline Shifu Chen

Publication for Gencore

Gencore citations


NRF2 regulates endothelial glycolysis and proliferation with miR 93 and mediates the effects of oxidized phospholipids on endothelial activation

Nucleic Acids Res
PMCID: 5815049
PMID: 29161413
DOI: 10.1093/nar/gkx1155

[…] hermo Fisher Scientific). The libraries were quantified (Qubit dsDNA HS Assay Kit on a Qubit fluorometer, Thermo Fisher Scientific) and pooled for 50bp single-end sequencing with Illumina Hi-Seq2000 (GenCore, EMBL Heidelberg, Germany). […]


Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions

Sci Rep
PMCID: 5476593
PMID: 28630429
DOI: 10.1038/s41598-017-03741-6

[…] ess integrity, at a NanoDrop 2000 Spectrophotometer to assess purity, and quantified at a Qubit fluorometer. 1.5 µg RNA from two still and two turbulent samples from each time point were sent to EMBL Gencore Facility for sequencing on the Illumina HiSeq2000 platform; single end 50 bp reads were produced. RNA-seq data are available in ArrayExpress under accession number E-MTAB-5031.1 µg RNA from th […]

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Gencore institution(s)
HaploX Biotechnology, Shenzhen, China; Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
Gencore funding source(s)
Supported by Shenzhen Science and Technology Innovation Committee Technical Research Project (grant No. JSGG20180703164202084) and Shenzhen Strategic Emerging Industry Development Special Fund (grant No.20170922151538732).

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