Gencore specifications

Information


Unique identifier OMICS_33308
Name Gencore
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A sorted file with its corresponding reference file.
Input format FASTA+BAM,SAM
Output data A summary of the data before and after processing with metrics and a duplication level histogram.
Output format JSON+SAM,BAM
Operating system Unix/Linux
Programming languages C++
License MIT License
Computer skills Advanced
Version 0.10.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Shifu Chen <>

Publication for Gencore

Gencore institution(s)
HaploX Biotechnology, Shenzhen, China; Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
Gencore funding source(s)
Supported by Shenzhen Science and Technology Innovation Committee Technical Research Project (grant No. JSGG20180703164202084) and Shenzhen Strategic Emerging Industry Development Special Fund (grant No.20170922151538732).

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