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GenDBE specifications


Unique identifier OMICS_16814
Name GenDBE
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


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GenDBE citations


Three previously unrecognised classes of biosynthetic enzymes revealed during the production of xenovulene A

Nat Commun
PMCID: 5958101
PMID: 29773797
DOI: 10.1038/s41467-018-04364-9

[…] gene rapidly identified a 1.6-mb scaffold as containing a 49-kb bgc potentially involved in tropolone biosynthesis (table ). automatic gene prediction by augustus 3.0 and annotation within the gendbe platform revealed the presence of numerous genes with potential roles in secondary metabolism (supplementary fig. , supplementary table ). previous work has shown that the key steps of fungal […]


Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines

PLoS One
PMCID: 3888431
PMID: 24427317
DOI: 10.1371/journal.pone.0085568

[…] cells were publicly released until recently, which puts a severe limitation on biotechnological research. two extended annotation systems and web-based tools, one for browsing eukaryotic genomes (gendbe) and one for viewing eukaryotic transcriptomes (sams), were established as the first step towards a publicly usable cho cell genome/transcriptome analysis platform. this is complemented […]


Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production

BMC Genomics
PMCID: 3890519
PMID: 24373495
DOI: 10.1186/1471-2164-14-926

[…] by evidencemodeler. visualisation of gene predictions and further manual curation of data were performed using the in-house genome annotation system gendb [], modified for eukaryotic genomes (gendbe)., to investigate the chloroplast-specific features of m. neglectum, the chloroplast genome was compared with those of c. reinhardtii and n. gaditana (figure , additional file : figure s4). […]

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