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GenDBE specifications

Information


Unique identifier OMICS_16814
Name GenDBE
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline GenDBE team

GenDBE citations

 (3)
library_books

Three previously unrecognised classes of biosynthetic enzymes revealed during the production of xenovulene A

2018
Nat Commun
PMCID: 5958101
PMID: 29773797
DOI: 10.1038/s41467-018-04364-9

[…] aspks1 gene rapidly identified a 1.6-Mb scaffold as containing a 49-kb BGC potentially involved in tropolone biosynthesis (Table ). Automatic gene prediction by Augustus 3.0 and annotation within the GenDBE platform revealed the presence of numerous genes with potential roles in secondary metabolism (Supplementary Fig. , Supplementary Table ). Previous work has shown that the key steps of fungal t […]

library_books

Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines

2014
PLoS One
PMCID: 3888431
PMID: 24427317
DOI: 10.1371/journal.pone.0085568

[…] eotide Archive under accession number PRJEB4847 (http://www.ebi.ac.uk/ena/data/view/PRJEB4847). The transcripts and the functional annotation can be browsed and downloaded in different formats at the GenDBE (https://gendbe.cebitec.uni-bielefeld.de/cho.html) and SAMS (https://sams.cebitec.uni-bielefeld.de/cho.html) project pages. […]

library_books

Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production

2013
BMC Genomics
PMCID: 3890519
PMID: 24373495
DOI: 10.1186/1471-2164-14-926

[…] genomes were analysed and printed with OGDRAW []. All gene information were integrated to the annotation platform GenDBE, which is a modification of GenDB for the annotation of eukaryotic genomes []. GenDBE allows the manual curation of gene specific annotation in addition to the visualisation of gene order.This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accessi […]

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