GenDBE statistics

Citations per year

Tool usage distribution map

This map represents all the scientific publications referring to GenDBE per scientific context

Associated diseases

Popular tool citations

Functional annotation Gene prediction Protein-coding gene prediction Annotation workflows

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GenDBE specifications

Web

Information

Unique identifier	OMICS_16814
Name	GenDBE
Interface	Web user interface
Restrictions to use	None
Computer skills	Basic
Stability	Stable
Maintained	Yes

Maintainer

GenDBE team

GenDBE citations

(3)

Three previously unrecognised classes of biosynthetic enzymes revealed during the production of xenovulene A

2018

Nat Commun

PMCID: 5958101

PMID: 29773797

DOI: 10.1038/s41467-018-04364-9

[…] aspks1 gene rapidly identified a 1.6-Mb scaffold as containing a 49-kb BGC potentially involved in tropolone biosynthesis (Table ). Automatic gene prediction by Augustus 3.0 and annotation within the GenDBE platform revealed the presence of numerous genes with potential roles in secondary metabolism (Supplementary Fig. , Supplementary Table ). Previous work has shown that the key steps of fungal t […]

Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines

2014

PLoS One

PMCID: 3888431

PMID: 24427317

DOI: 10.1371/journal.pone.0085568

[…] stem GenDB was extended for eukaryotic genomes. A graphical representation of the reference-based transcripts and their intron-exon structures on the CHO-K1 draft genome is publicly available at the GenDBE web-interface (https://gendbe.cebitec.uni-bielefeld.de/cho.html) (). Additionally, the final transcripts can be browsed using the SAMS web-interface (https://sams.cebitec.uni-bielefeld.de/cho […]

Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production

2013

BMC Genomics

PMCID: 3890519

PMID: 24373495

DOI: 10.1186/1471-2164-14-926

[…] r 1.2 server [] and tRNAs were determined by tRNAscan-SE version 1.21 [,]. Organellar genomes were analysed and printed with OGDRAW []. All gene information were integrated to the annotation platform GenDBE, which is a modification of GenDB for the annotation of eukaryotic genomes []. GenDBE allows the manual curation of gene specific annotation in addition to the visualisation of gene order.This […]

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