GenDBE statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool GenDBE

Tool usage distribution map

This map represents all the scientific publications referring to GenDBE per scientific context
info info

Associated diseases


Popular tool citations

chevron_left Annotation workflows Functional annotation Gene prediction Protein-coding gene prediction chevron_right
Want to access the full stats & trends on this tool?

GenDBE specifications


Unique identifier OMICS_16814
Name GenDBE
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline GenDBE team

GenDBE citations


Three previously unrecognised classes of biosynthetic enzymes revealed during the production of xenovulene A

Nat Commun
PMCID: 5958101
PMID: 29773797
DOI: 10.1038/s41467-018-04364-9

[…] aspks1 gene rapidly identified a 1.6-Mb scaffold as containing a 49-kb BGC potentially involved in tropolone biosynthesis (Table ). Automatic gene prediction by Augustus 3.0 and annotation within the GenDBE platform revealed the presence of numerous genes with potential roles in secondary metabolism (Supplementary Fig. , Supplementary Table ). Previous work has shown that the key steps of fungal t […]


Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines

PLoS One
PMCID: 3888431
PMID: 24427317
DOI: 10.1371/journal.pone.0085568

[…] eotide Archive under accession number PRJEB4847 ( The transcripts and the functional annotation can be browsed and downloaded in different formats at the GenDBE ( and SAMS ( project pages. […]


Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production

BMC Genomics
PMCID: 3890519
PMID: 24373495
DOI: 10.1186/1471-2164-14-926

[…] genomes were analysed and printed with OGDRAW []. All gene information were integrated to the annotation platform GenDBE, which is a modification of GenDB for the annotation of eukaryotic genomes []. GenDBE allows the manual curation of gene specific annotation in addition to the visualisation of gene order.This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accessi […]

Want to access the full list of citations?

GenDBE reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GenDBE