GenDBE statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GenDBE

Tool usage distribution map

This map represents all the scientific publications referring to GenDBE per scientific context
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Associated diseases


Popular tool citations

chevron_left Functional annotation Gene prediction Protein-coding gene prediction Annotation workflows chevron_right
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GenDBE specifications


Unique identifier OMICS_16814
Name GenDBE
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline GenDBE team

GenDBE citations


Three previously unrecognised classes of biosynthetic enzymes revealed during the production of xenovulene A

Nat Commun
PMCID: 5958101
PMID: 29773797
DOI: 10.1038/s41467-018-04364-9

[…] aspks1 gene rapidly identified a 1.6-Mb scaffold as containing a 49-kb BGC potentially involved in tropolone biosynthesis (Table ). Automatic gene prediction by Augustus 3.0 and annotation within the GenDBE platform revealed the presence of numerous genes with potential roles in secondary metabolism (Supplementary Fig. , Supplementary Table ). Previous work has shown that the key steps of fungal t […]


Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis Pipelines

PLoS One
PMCID: 3888431
PMID: 24427317
DOI: 10.1371/journal.pone.0085568

[…] stem GenDB was extended for eukaryotic genomes. A graphical representation of the reference-based transcripts and their intron-exon structures on the CHO-K1 draft genome is publicly available at the GenDBE web-interface ( (). Additionally, the final transcripts can be browsed using the SAMS web-interface ( […]


Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production

BMC Genomics
PMCID: 3890519
PMID: 24373495
DOI: 10.1186/1471-2164-14-926

[…] r 1.2 server [] and tRNAs were determined by tRNAscan-SE version 1.21 [,]. Organellar genomes were analysed and printed with OGDRAW []. All gene information were integrated to the annotation platform GenDBE, which is a modification of GenDB for the annotation of eukaryotic genomes []. GenDBE allows the manual curation of gene specific annotation in addition to the visualisation of gene order.This […]

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