Protocols

Gendoo specifications

Information


Unique identifier OMICS_21931
Name Gendoo
Alternative name Gene, Disease Features Ontology-based Overview System
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.206
Content license Creative Commons Attribution 2.1 Japan License.
Maintained Yes

Maintainer


  • person_outline Takeru Nakazato

Additional information


http://gendoo.dbcls.jp/help/help-en.html

Publications for Gene, Disease Features Ontology-based Overview System

Gendoo citations

 (2)
library_books

An application of MeSH enrichment analysis in livestock

2015
Anim Genet
PMCID: 5032990
PMID: 26036323
DOI: 10.1111/age.12307

[…] e similar concepts with those of GO (Osborne et al. ). As MeSH terms are assigned to PubMed literature, an additional step is required to associate MeSH to genes. Several computational tools, such as Gendoo (Nakazato et al. ), GeneMesh (Jani et al. ) and MeSHOPs (Cheung et al. ), associate genes with MeSH to permit finding statistically overrepresented MeSH annotations. Nakazato et al. () argue th […]

call_split

MeSH ORA framework: R/Bioconductor packages to support MeSH over representation analysis

2015
BMC Bioinformatics
PMCID: 4343279
PMID: 25887539
DOI: 10.1186/s12859-015-0453-z
call_split See protocol

[…] 15 major organisms and 100 minor organisms (Figure ). A total of 3000 (100 minor organisms × 15 major organisms × 2-direction) blastp programs were performed (E-values are 50). Figure 6 Figure 7 3) Gendoo The Entrez GeneID - MeSH ID relationship in Gendoo was assigned using a text-mining technique. The degree of relevance between the Entrez Gene and MeSH IDs was assessed by the Kullback-Leibler […]

Gendoo institution(s)
Database Center for Life Science (DBCLS), Research Organization of Information and Systems (ROIS), Faculty of Engineering, The University of Tokyo, Tokyo, Japan; Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University, Osaka, Japan
Gendoo funding source(s)
Supported by Integrated Database Project of the Ministry of Education, Culture, Sports, Science and Technology of Japan.

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