GeneNet specifications


Unique identifier OMICS_19041
Name GeneNet
Alternative names Gene-disease Networking, MC-GeneNet (Molecular Connections’ Gene-disease Networking)
Restrictions to use License purchase required
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes


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GeneNet citations


Estimating genome wide regulatory activity from multi omics data sets using mathematical optimization

BMC Syst Biol
PMCID: 5369021
PMID: 28347313
DOI: 10.1186/s12918-017-0419-z

[…] simulated expression data of 900 target genes biRte was compared to BIRTA [], GEMULA [] and a hypergeometric test and further to other network reconstruction algorithms like ARACNE [], GENIE3 [] and GeneNet []. BiRte performed best in regulator activity predictions including a favorable computation time and was robust against false positive and false negative target gene predictions. Additionally […]


Prognostic Value of Three Different Methods of MGMT Promoter Methylation Analysis in a Prospective Trial on Newly Diagnosed Glioblastoma

PLoS One
PMCID: 3302822
PMID: 22428052
DOI: 10.1371/journal.pone.0033449

[…] ed to indicate statistical significance.For correlation analysis, partial correlations were computed using the estimation procedure described by Schäfer and Strimmer and implemented in the R package GeneNet, version 1.2.4. To assess the additional prognostic value of methylation measures beyond clinical factors, models with and without MSP, PSQ, or MS-MLPA data were compared by likelihood ratio t […]

GeneNet institution(s)
Molecular Connections

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