Gene expression analysis software tools and databases

Transcript abundance is in many ways an extraordinary phenotype, with special attributes that confer particular importance on an understanding of its genetics. The primary transformative potential of genome-wide gene expression genetics is the sheer number of traits —…

Gene expression analysis steps

Bioinformatics tools

Databases

Gene expression analysis software tools and databases

Most Recent Tools

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Ensembl…
Dataset

Ensembl Regulatory Build

Provides a high-level overview of the regulatory activity of the genome. The…

Provides a high-level overview of the regulatory activity of the genome. The Ensembl Regulatory Build offers putative regulatory regions from public experimental data, and associate these regions…

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CREEDS
Dataset

CREEDS CRowd Extracted Expression of Differential Signatures

Provides an access to the three collections of gene expression signatures for…

Provides an access to the three collections of gene expression signatures for knowledge reuse and exploration. The CREEDS database visualizes all of the signatures in a packed circles layout in which…

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uPEPperoni
Web

uPEPperoni

Permits to identify putative bioactive peptides. uPEPperoni contains three…

Permits to identify putative bioactive peptides. uPEPperoni contains three different parts: a conserved uPEP (peptides encoded by upstream open reading frames) search utility, a heatmap generation…

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CoxPathDB
Dataset

CoxPathDB CO-eXpressed PATHways DataBase for tomato

Provides a ranked list of pathways in which higher-ranked pathways are more…

Provides a ranked list of pathways in which higher-ranked pathways are more likely related to each tomato gene. CoxPathDB can be used to predict the function of tomato genes from the results of…

Most Popular Tools

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

Genevestigator
Web

Genevestigator

An innovative online platform to help you interpret your results, prioritize…

An innovative online platform to help you interpret your results, prioritize targets and biomarkers, identify correlated genes, discover novel disease-specific genes, or simply to explore the…

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g:Profiler
Web

g:Profiler

A popular collection of web tools for functional analysis. g:GOSt and g:Cocoa…

A popular collection of web tools for functional analysis. g:GOSt and g:Cocoa combine comprehensive methods for interpreting gene lists, ordered lists and list collections in the context of…

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