Gene expression analysis software tools and databases

Transcript abundance is in many ways an extraordinary phenotype, with special attributes that confer particular importance on an understanding of its genetics. The primary transformative potential of genome-wide gene expression genetics is the sheer number of traits —…

Gene expression analysis steps

Interpretation

Annotation

Data visualization

Most recent bioinformatics tools

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Expression…
Web

Expression Angler

Identifies genes showing similar expression or response profiles from selected…

Identifies genes showing similar expression or response profiles from selected databases. Expression Angler employs the Pearson correlation coefficient to identify co-regulated genes. It provides…

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M2EFM
Desktop

M2EFM Methylation-to-Expression Feature Model

Builds prognostic models. M2EFM is a data-integrated modeling approach that…

Builds prognostic models. M2EFM is a data-integrated modeling approach that predicts risk based on data integrated from multiple sources, taking advantage of tried-and-true prognostic factors while…

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tximeta
Desktop

tximeta

Makes numerous annotations and metadata collections. tximeta’ purpose is to…

Makes numerous annotations and metadata collections. tximeta’ purpose is to conserve signature of the transcriptome sequence itself using a hash function.

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Pancancer…
Web
Desktop

Pancancer cluster assignment

Serves for studying tumour mutational profiles. Pancancer cluster assignment…

Serves for studying tumour mutational profiles. Pancancer cluster assignment infers the dependency structure of mutations and performed fully Bayesian inference to capture the uncertainty in network…

Most popular analytical software and databases

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VENNY
Web

VENNY

Allows comparison of lists with Venn Diagrams. VENNY is a web-server,…

Allows comparison of lists with Venn Diagrams. VENNY is a web-server, consisting in a single standard html file that can be used off-line.

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

Blast2GO
Desktop

Blast2GO

A comprehensive bioinformatics tool for functional annotation of sequences and…

A comprehensive bioinformatics tool for functional annotation of sequences and data mining on the resulting annotations, primarily based on the gene ontology (GO) vocabulary. Blast2GO optimizes…

Curators for Gene expression analysis

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