Gene expression analysis steps

Bioinformatics tools

Databases

Transcript abundance is in many ways an extraordinary phenotype, with special attributes that confer particular importance on an understanding of its genetics. The primary transformative potential of genome-wide gene expression genetics is the sheer number of traits —…

Gene expression analysis software tools and databases

Most Recent Tools

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SAGEnhaft
Desktop

SAGEnhaft

Implements several functions useful for analysis of gene expression data by…

Implements several functions useful for analysis of gene expression data by sequencing tags as done in SAGE (Serial Analysis of Gene Expressen) data. For example, SAGEnhaft permits extraction of a…

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KrillDB
Data

KrillDB

Contains 133,962 transcribed sequences assembled from the combined new Illumina…

Contains 133,962 transcribed sequences assembled from the combined new Illumina sequences and previously published 454 assembled pyrosequencing data. KrillDB gives access to: 1) the full list of…

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ChromHeatMap
Desktop

ChromHeatMap

Plots genome-wide data (e.g. expression, CGH, SNP) along each strand of a given…

Plots genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The ChromHeatMap package provides functions for visualising expression data in a genomic…

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QRNA
Desktop

QRNA

Provides a prototype noncoding RNA genefinder, based on comparative genome…

Provides a prototype noncoding RNA genefinder, based on comparative genome sequence analysis. QRNA detects conserved RNA secondary structures, including both ncRNA genes and cis-regulatory RNA…

Most Popular Tools

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

Genevestigator
Web

Genevestigator

An innovative online platform to help you interpret your results, prioritize…

An innovative online platform to help you interpret your results, prioritize targets and biomarkers, identify correlated genes, discover novel disease-specific genes, or simply to explore the…

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g:Profiler
Web

g:Profiler

A popular collection of web tools for functional analysis. g:GOSt and g:Cocoa…

A popular collection of web tools for functional analysis. g:GOSt and g:Cocoa combine comprehensive methods for interpreting gene lists, ordered lists and list collections in the context of…

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