Gene expression data analysis software tools

Transcript abundance is in many ways an extraordinary phenotype, with special attributes that confer particular importance on an understanding of its genetics. The primary transformative potential of genome-wide gene expression genetics is the sheer number of traits — thousands — that can be assayed simultaneously. Source text: Rockman and Kruglyak, 2006

Survival analysis

Annotation

Genome-wide association study/Linkage/QTL

Interpretation

Data visualization

Network analysis

Enrichment analysis

Unclassified tools