Gene expression analysis steps

Bioinformatics tools

Databases

Transcript abundance is in many ways an extraordinary phenotype, with special attributes that confer particular importance on an understanding of its genetics. The primary transformative potential of genome-wide gene expression genetics is the sheer number of traits —…

Gene expression analysis software tools and databases

Most Recent Tools

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SemanticSCo
Desktop

SemanticSCo

Provides support for the composition of RESTful web services semantically…

Provides support for the composition of RESTful web services semantically annotated using SAWSDL. SemanticSCo is a supporting platform that supports the definition of constraints/conditions regarding…

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GenExpDB
Dataset

GenExpDB E. coli Gene Expression Database

Provides reference genome of the E. coli. GenExpDB can be searchable by gene,…

Provides reference genome of the E. coli. GenExpDB can be searchable by gene, locus or location. It is based on NCBI Gene Expression Omnibus’s information. The database contains 3194 samples of…

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QPATH
Desktop

QPATH Quantitative methods for pathology

Predicts the molecular subtypes of colorectal cancer from the routine histology…

Predicts the molecular subtypes of colorectal cancer from the routine histology images. QPATH uses neural networks for extracting local descriptors which were then used for constructing a…

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KMC-KaiC
Desktop

KMC-KaiC Kinetic Monte Carlo simulation of the in-vitro Kai Circadian clock

Simulates a model of the post-translational Kai circadian clock. KMC-KaiC is a…

Simulates a model of the post-translational Kai circadian clock. KMC-KaiC is a dedicated Kinetic Monte Carlo (KMC) algorithm that allows to simulate the Kai system at the level of individual KaiC…

Most Popular Tools

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

Genevestigator
Web

Genevestigator

An innovative online platform to help you interpret your results, prioritize…

An innovative online platform to help you interpret your results, prioritize targets and biomarkers, identify correlated genes, discover novel disease-specific genes, or simply to explore the…

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g:Profiler
Web

g:Profiler

A popular collection of web tools for functional analysis. g:GOSt and g:Cocoa…

A popular collection of web tools for functional analysis. g:GOSt and g:Cocoa combine comprehensive methods for interpreting gene lists, ordered lists and list collections in the context of…

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