Gene expression analysis software tools and databases

Transcript abundance is in many ways an extraordinary phenotype, with special attributes that confer particular importance on an understanding of its genetics. The primary transformative potential of genome-wide gene expression genetics is the sheer number of traits —…

Gene expression analysis steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

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mtsRPFdb
Dataset

mtsRPFdb Mouse Tissue-Specific Ribosome Protected Fragment Database

Provides data of tissue-specific ribosome protected fragments in mice. mtsRPFdb…

Provides data of tissue-specific ribosome protected fragments in mice. mtsRPFdb offers about 28,500 genes’ transcriptional and translational expression information. It offers a web browser that…

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RiboSeqDB
Dataset

RiboSeqDB

Contains structured summary, links to the selected data sets in mouse and human…

Contains structured summary, links to the selected data sets in mouse and human cells. RiboSeqDB provides users with reliable informatics support, fast and convenient navigation, data search, supply…

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GeneTopics
Algorithm

GeneTopics

Ccombines ideas from gene set enrichment with topic model inference. GeneTopics…

Ccombines ideas from gene set enrichment with topic model inference. GeneTopics is able to quickly and comprehensively identify topics in the literature that a biologist should consider when…

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CEMiTool
Desktop

CEMiTool Co-expression Modules Identification Tool

Optimizes weighted gene co-expression network analysis (WGCNA) gene…

Optimizes weighted gene co-expression network analysis (WGCNA) gene co-expression module discovery. CEMiTool permits users to specify network parameters to improve the finding. Thank to discovered…

Most popular analytical software and databases

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

Genevestigator
Web

Genevestigator

An innovative online platform to help you interpret your results, prioritize…

An innovative online platform to help you interpret your results, prioritize targets and biomarkers, identify correlated genes, discover novel disease-specific genes, or simply to explore the…

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g:Profiler
Web

g:Profiler

Provides tool to perform functional enrichment analysis and mine additional…

Provides tool to perform functional enrichment analysis and mine additional information. g:Profiler is a web server that allows to characterize and manipulate gene lists of high-throughput genomics.…

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