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Gene expression analysis software tools and databases

Transcript abundance is in many ways an extraordinary phenotype, with special attributes that confer particular importance on an understanding of its genetics. The primary transformative potential of genome-wide gene expression genetics is the sheer number of traits —…

Gene expression analysis steps

Interpretation

Annotation

Data visualization

Experts in Gene expression analysis

They share and annotate bioinformatics tools

Most recent bioinformatics tools

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MultiCluster
Algorithm

MultiCluster

Provides an approach for detecting three-way clustering patterns in…

Provides an approach for detecting three-way clustering patterns in multi-tissue multi-individual gene expression data. MultiCluster is an algorithm that proposes a multi-way clustering method based…

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NETBAGs
Algorithm

NETBAGs NETwork Based clustering Approach with Gene signatures

Provides an algorithm allowing the classification of samples according to their…

Provides an algorithm allowing the classification of samples according to their smoothed network profiles instead of on their gene signatures. NETBAGs aims to provide an alternative and complementary…

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polyClustR
Desktop

polyClustR

Merges clusters obtained through different methods. polyClustR is an R package…

Merges clusters obtained through different methods. polyClustR is an R package determining a solution derived from various consensus methods and statistical scores. The application allows users to…

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PatkarEtAl2017
Algorithm

PatkarEtAl2017

Offers an approach for characterize sample-specific function of a gene. The…

Offers an approach for characterize sample-specific function of a gene. The algorithm aims to investigate molecular changes related with cancer thanks to a network-based featuring. It uses…

Most popular analytical software and databases

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VENNY
Web

VENNY

Allows comparison of lists with Venn Diagrams. VENNY is a web-server,…

Allows comparison of lists with Venn Diagrams. VENNY is a web-server, consisting in a single standard html file that can be used off-line.

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Riboswitch…
Web

Riboswitch Scanner

Detects riboswitches from genomic sequences with high sensitivity and…

Detects riboswitches from genomic sequences with high sensitivity and specificity. Riboswitch Scanner uses a method based on profile Hidden Markov Models (pHMMs) for detecting riboswitches.…

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Enrichr
Web

Enrichr

An integrative web-based and mobile software application that includes new…

An integrative web-based and mobile software application that includes new gene-set libraries, an alternative approach to rank enriched terms, and various interactive visualization approaches to…

limma
Desktop

limma Linear Models for Microarray Data

Provides an integrated solution for analysing data from gene expression…

Provides an integrated solution for analysing data from gene expression experiments. limma contains rich features for handling complex experimental designs and for information borrowing to overcome…

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