Gene expression microarray is a very powerful high-throughput tool capable of monitoring the expression of thousands of genes in an organism simultaneously. The power of these tools has been applied to a range of applications, including discovering…
Gene expression microarray is a very powerful high-throughput tool capable of monitoring the expression of thousands of genes in an organism simultaneously. The power of these tools has been applied to a range of applications, including discovering novel disease subtypes, developing new diagnostic tools, and identifying underlying mechanisms of disease or drug response. However, this technology necessarily produces a large amount of data, challenging us to interpret it by exploiting modern computational and statistical tools.
Gene expression microarray data analysis bioinformatics software tools
Captures the uncertainty and underlying clusters in the data. GSOM is effective…
Captures the uncertainty and underlying clusters in the data. GSOM is effective in both clustering samples and developing an unsupervised fuzzy rough feature selection (UFRFS) method for gene…
Evaluates cellular engineering processes in a systemic rather than marker-based…
Evaluates cellular engineering processes in a systemic rather than marker-based fashion. eegc integrates transcriptome profiling and functional analysis. It clusters genes into categories…
Extracts biclusters from multiple time-series of gene expression profiles.…
Extracts biclusters from multiple time-series of gene expression profiles. EDISA is a probabilistic clustering approach for 3D gene-condition-time datasets and an extension of the ISA approach. This…
Infers cell type-specific expression based on co-expression similarity with…
Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. CellMapper is an R package that can make accurate predictions using publicly available…
An innovative online platform to help you interpret your results, prioritize…
An innovative online platform to help you interpret your results, prioritize targets and biomarkers, identify correlated genes, discover novel disease-specific genes, or simply to explore the…
A plug-in for the jQuery Javascript library. Jvenn hanldes up to six classes…
A plug-in for the jQuery Javascript library. Jvenn hanldes up to six classes venn diagram and is easily integrable within web sites. It allows to display Edwards-Venn diagram and to provide the data…