Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Gene fusion visualization software tools | Genome variation analysis

The discovery of novel gene fusions in tumor samples has rapidly accelerated with the rise of next-generation sequencing. A growing number of tools enable discovery of gene fusions from RNA-seq data. However it is likely that not all gene fusions…
IGV
Desktop

IGV Integrative Genomics Viewer

A high-performance viewer that efficiently handles large heterogeneous data…

A high-performance viewer that efficiently handles large heterogeneous data sets, while providing a smooth and intuitive user experience at all levels of genome resolution. A key characteristic of…

oneChannelGUI
Desktop

oneChannelGUI

Facilitates analysis of microarrays and miRNA/RNA-seq data on laptops.…

Facilitates analysis of microarrays and miRNA/RNA-seq data on laptops. oneChannelGUI can be used for quality control, normalization, filtering, statistical validation and data mining for single…

G T A T C G C T A
iFUSE
Web
Desktop

iFUSE

Allows exploration of fusion gene. iFuse performs a comparison of two or more…

Allows exploration of fusion gene. iFuse performs a comparison of two or more genomes. It permits users to visualize all detected structural variation (SV) events and fusion genes determined in their…

G T A T C G C T A
AGFusion
Web

AGFusion Annotate Gene Fusion

A python package to annotate and visualize gene fusions. For a given gene…

A python package to annotate and visualize gene fusions. For a given gene fusion, AGFusion will predict the cDNA, CDS, and protein sequences resulting from fusion of all combinations of transcripts…

G T A T C G C T A
Chimeraviz
Desktop

Chimeraviz

Provides multiple tools for visualizing chimeric RNA molecules as well as…

Provides multiple tools for visualizing chimeric RNA molecules as well as functions for sorting and filtering candidates. Chimeraviz is a Bioconductor package that visualizes chimeric RNA and…

G T A T C G C T A
TViewer
Desktop

TViewer Transcriptome Viewer

Allows visualization of detected gene fusions on the transcript level. TViewer…

Allows visualization of detected gene fusions on the transcript level. TViewer provides functions for visually integrating transcript annotations and gene fusions with RNA-seq data. It enables…

G T A T C G C T A
Clinker
Desktop

Clinker

Allows users to explore fusion genes discovered in RNA-seq data. Clinker allows…

Allows users to explore fusion genes discovered in RNA-seq data. Clinker allows raw reads involved in the discovery of fusion genes to be viewed and inspected in IGV. It generates annotations of…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.