Protocols

gene.iobio specifications

Information


Unique identifier OMICS_21921
Name gene.iobio
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.4
Stability Stable
Maintained Yes

Documentation


Additional information


http://gene.iobio.io/help_resources.html

gene.iobio citations

 (2)
call_split

Methotrexate sensitizes drug resistant metastatic melanoma cells to BRAF V600E inhibitors dabrafenib and encorafenib

2018
Oncotarget
PMCID: 5862581
PMID: 29568360
DOI: 10.18632/oncotarget.24341
call_split See protocol

[…] o retain variants based on a minimum read depth of 4, and minimum quality of Phred 30. Boolean operations on raw variant panels from multiple samples are computed using VCFTools [].The web-based tool gene.iobio.io was used to graphically explore VCF files by providing a list of genes to analyze. Internally, it uses Ensembl’s VEP [] program to provide estimates of variant effect (missense, frameshi […]

library_books

Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools

2017
PMCID: 5915807
PMID: 29707261
DOI: 10.1017/cts.2017.311

[…] iated with early childhood seizures using the Phenolyzer function. Next, due to the absence of defined variant call format [] files, the Freebayes variant calling algorithm, available natively within gene.iobio, automatically generated variant calls within this set of genes in about 2 minutes. Variants in the proband and 2 parents, together with the underlying sequence coverage, were then visualiz […]

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