gene.iobio specifications


Unique identifier OMICS_21921
Name gene.iobio
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.4
Stability Stable
Maintained Yes


Additional information

gene.iobio citations


Methotrexate sensitizes drug resistant metastatic melanoma cells to BRAF V600E inhibitors dabrafenib and encorafenib

PMCID: 5862581
PMID: 29568360
DOI: 10.18632/oncotarget.24341
call_split See protocol

[…] o retain variants based on a minimum read depth of 4, and minimum quality of Phred 30. Boolean operations on raw variant panels from multiple samples are computed using VCFTools [].The web-based tool was used to graphically explore VCF files by providing a list of genes to analyze. Internally, it uses Ensembl’s VEP [] program to provide estimates of variant effect (missense, frameshi […]


Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools

PMCID: 5915807
PMID: 29707261
DOI: 10.1017/cts.2017.311

[…] iated with early childhood seizures using the Phenolyzer function. Next, due to the absence of defined variant call format [] files, the Freebayes variant calling algorithm, available natively within gene.iobio, automatically generated variant calls within this set of genes in about 2 minutes. Variants in the proband and 2 parents, together with the underlying sequence coverage, were then visualiz […]

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