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gene.iobio specifications


Unique identifier OMICS_21921
Name gene.iobio
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.4
Stability Stable
Maintained Yes


Additional information

gene.iobio citations


Methotrexate sensitizes drug resistant metastatic melanoma cells to BRAF V600E inhibitors dabrafenib and encorafenib

PMCID: 5862581
PMID: 29568360
DOI: 10.18632/oncotarget.24341

[…] variants based on a minimum read depth of 4, and minimum quality of phred 30. boolean operations on raw variant panels from multiple samples are computed using vcftools []., the web-based tool was used to graphically explore vcf files by providing a list of genes to analyze. internally, it uses ensembl’s vep [] program to provide estimates of variant effect (missense, […]


Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools

PMCID: 5915807
PMID: 29707261
DOI: 10.1017/cts.2017.311

[…] distribution, percentage of mapped reads, and duplication rate were inspected visually in the web browser using the graphics returned by the software., bam files were accessed from within the gene.iobio web app ( by clicking the “files” button, selecting the relevant samples, and then clicking “load.” variant calling was performed on the selected bam files within […]

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