gene.iobio statistics

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Citations per year

Number of citations per year for the bioinformatics software tool gene.iobio
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Tool usage distribution map

This map represents all the scientific publications referring to gene.iobio per scientific context
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Associated diseases

This word cloud represents gene.iobio usage per disease context
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Protocols

gene.iobio specifications

Information


Unique identifier OMICS_21921
Name gene.iobio
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.4
Stability Stable
Maintained Yes

Documentation


Additional information


http://gene.iobio.io/help_resources.html

gene.iobio citations

 (2)
call_split

Methotrexate sensitizes drug resistant metastatic melanoma cells to BRAF V600E inhibitors dabrafenib and encorafenib

2018
Oncotarget
PMCID: 5862581
PMID: 29568360
DOI: 10.18632/oncotarget.24341
call_split See protocol

[…] o retain variants based on a minimum read depth of 4, and minimum quality of Phred 30. Boolean operations on raw variant panels from multiple samples are computed using VCFTools [].The web-based tool gene.iobio.io was used to graphically explore VCF files by providing a list of genes to analyze. Internally, it uses Ensembl’s VEP [] program to provide estimates of variant effect (missense, frameshi […]

library_books

Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools

2017
PMCID: 5915807
PMID: 29707261
DOI: 10.1017/cts.2017.311

[…] physician’s expertise and familiarity with clinical information of the patient was especially helpful to narrow in on the most common genes and variants and to determine mode of inheritance. Although gene.iobio allows the analyst to highlight, for example X-linked dominant, recessive, or autosomal dominant variants, physician knowledge led us to search for de novo mutations in the patient presente […]


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