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G-Mo.R-Se | Annotating genomes with massive-scale RNA sequencing

A method aimed at using RNA-Seq short reads to build de novo gene models. First, candidate exons are built directly from the positions of the reads mapped on the genome (without any ab initio assembly of the reads), and all the possible splice junctions between those exons are tested against unmapped reads. The testing of junctions is directed by the information available in the RNA-Seq dataset rather than a priori knowledge about the genome. Exons can thus be chained into stranded gene models.

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G-Mo.R-Se classification

G-Mo.R-Se specifications

Unique identifier:
OMICS_01259
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Name:
Gene MOdeling using RNA-Seq
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

G-Mo.R-Se distribution

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No versioning.

G-Mo.R-Se support

Maintainer

  • G-Mo.R-Se <>

Credits

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Publications

Institution(s)

CEA, DSV, Institut de Génomique, Genoscope, Evry, France; CNRS, UMR 8030, Evry, France; Université d'Evry, Evry, France; Scientific and Technology Department, Verona, Italy; Istituto di Genomica Applicata, Parco Scientifico e Tecnologico di Udine, Udine, Italy; CRIBI, Università degli Studi di Padova, Padova, Italy

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