Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Gene network data | Biological pathway analysis

NCG
Dataset

NCG Network of Cancer Genes

A manually curated repository of cancer genes derived from the scientific…

A manually curated repository of cancer genes derived from the scientific literature. NCG release 5.0 (August 2015) collects 1571 cancer genes from 175 published studies that describe 188 mutational…

SoyNet
Dataset

SoyNet

A database of soybean co-functional networks and a companion web tool for…

A database of soybean co-functional networks and a companion web tool for network-based functional predictions. SoyNet maps 1 940 284 co-functional links between 40 812 soybean genes (covering 72.8%…

MouseNet
Dataset

MouseNet

Is an improved functional gene network for laboratory mouse, Mus musculus,…

Is an improved functional gene network for laboratory mouse, Mus musculus, which is the choice for many biomedical researches. To improve the previous version of MouseNet, a large volume of new…

A A A
Retina
Dataset

Retina

An accurate and high-resolution atlas of gene expression and gene co-regulation…

An accurate and high-resolution atlas of gene expression and gene co-regulation in human retina. We collected 50 high-quality post-mortem human retinas from donors and performed high-coverage…

FLOR-ID
Dataset

FLOR-ID Flowering-Interactive Database

An evolutive and interactive database of flowering time genes. The hand-curated…

An evolutive and interactive database of flowering time genes. The hand-curated database contains information on 306 genes and links to 1595 publications gathering the work of >4500 authors.…

WheatNet
Web

WheatNet

Provides a genome-scale functional gene network for T. aestivum and a companion…

Provides a genome-scale functional gene network for T. aestivum and a companion web server which provides network information and generates network-based functional hypotheses. WheatNet was…

GSKB
Dataset

GSKB Gene Set Knowledgebase

A comprehensive knowledgebase for pathway analysis in mouse. Interpretation of…

A comprehensive knowledgebase for pathway analysis in mouse. Interpretation of high-throughput genomics data based on biological pathways constitutes a constant challenge, partly because of the lack…

YeastNet
Dataset

YeastNet

A probabilistic functional gene network for baker's yeast, Saccharomyces…

A probabilistic functional gene network for baker's yeast, Saccharomyces cerevisiae, which has been a major model organism for eukaryotic genetics and cell biology. YeastNet v3 provides a new…

SorghumFDB
Dataset

SorghumFDB Sorghum functional genomics database

A platform for genome functional annotations and multi-dimensional network…

A platform for genome functional annotations and multi-dimensional network analyses in Sorghum (Sorghum bicolor [L.] Moench). SorghumFDB encompassed most information, such as various annotations of…

Zodiac
Web
Desktop

Zodiac

Allows investigation of molecular interactions in cancer. Zodiac integrates…

Allows investigation of molecular interactions in cancer. Zodiac integrates big-data analysis on multimodal TCGA data and produces knowledge of molecular interactions in cancer. It is based on…

EcoliNet
Dataset

EcoliNet

A probabilistic functional gene network for Escherichia coli, which is an…

A probabilistic functional gene network for Escherichia coli, which is an intensively studied species of bacteria, due to its utility in both exploring the molecular mechanisms underlying fundamental…

OrCGDB
Dataset

OrCGDB Oral Cancer Gene Database

Reports altered genes in oral cancer. OrCGDB is designed to be optimal for…

Reports altered genes in oral cancer. OrCGDB is designed to be optimal for utilization of the information for diagnosis, prognosis and treatment. It has been used to predict the possible role of…

GNP_Y2H
Dataset

GNP_Y2H Genome Network Platform Viewer

Permits users to access the integrated database of the Genome Network Project.…

Permits users to access the integrated database of the Genome Network Project. GNP_Y2H is a system that integrates experimental data generated from the project in association with the public…

iPathDB
Dataset

iPathDB INSECT PATHWAY DATABASE

Provides a set of constructed insect pathways. iPathDB is searchable by…

Provides a set of constructed insect pathways. iPathDB is searchable by keywords for species, pathway ID and pathway name. It returns some gene sequences, annotations and a pathway map. The database…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.