Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Gene name recognition software tools | Bio-entity identification

BC2GM-corpus
Dataset

BC2GM-corpus BioCreative II Gene Mention-corpus

Provides a corpus of scientific texts, used for BioCreative, a competition in…

Provides a corpus of scientific texts, used for BioCreative, a competition in which participants are given well defined text-mining or information extraction tasks in the biological domain.…

ProMiner
Desktop

ProMiner

Identifies potential name occurrences in the biomedical text and associate…

Identifies potential name occurrences in the biomedical text and associate protein and gene database identifiers with the detected matches. ProMiner follows a rule-based approach and its search…

GNAT
Desktop

GNAT

A library for text retrieval, named entity recognition, and normalization of…

A library for text retrieval, named entity recognition, and normalization of gene and protein mentions in biomedical text. GNAT can be used as a component to be integrated with other text-mining…

rainbow-nlp
Desktop

rainbow-nlp

Informatives extraction method for various natural language processing tasks…

Informatives extraction method for various natural language processing tasks including: supervised name entity recognition and relationship extraction from biomedical documents. rainbow-nlp is based…

GNormPlus
Desktop

GNormPlus

Handles both gene mention and identifier detection. GNormPlus integrates…

Handles both gene mention and identifier detection. GNormPlus integrates several advanced text-mining techniques, including SimConcept for resolving composite gene names. It compares favorably to…

text2genome
Desktop

text2genome

Extracts DNA sequences from biomedical articles and automatically maps them to…

Extracts DNA sequences from biomedical articles and automatically maps them to genomic databases. text2genome links articles to genes and organisms without relying on gene names or identifiers. It…

GeneTUKit
Desktop

GeneTUKit

A document-level gene normalization software for full-text articles. GeneTUKit…

A document-level gene normalization software for full-text articles. GeneTUKit employs both local context surrounding gene mentions and global context from the whole full-text document. It can…

GOCat
Web

GOCat Gene Ontology Categorizer

Computes similarities between an input text and already curated instances…

Computes similarities between an input text and already curated instances contained in a knowledge base to infer gene ontology concepts. The main limit of GOCat, both observed by reviewers and…

OrthoRBH
Desktop

OrthoRBH

Enables the rapid identification of specific gene families of interest in…

Enables the rapid identification of specific gene families of interest in related species. OrthoRBH streamlines the collection of homologs prior to downstream molecular evolutionary analysis. The…

DynGO
Desktop

DynGO

Provides several advanced functionalities in addition to the standard browsing…

Provides several advanced functionalities in addition to the standard browsing capability of the official Gene Ontology (GO) browsing tool. DynGO allows users to conduct batch retrieval of GO…

MetaMine
Desktop

MetaMine

Enables the detection of gene patterns in an environmental context. MetaMine…

Enables the detection of gene patterns in an environmental context. MetaMine offers a targeted, knowledge driven system to detect gene patterns for subsequent correlation with environmental…

GenNorm
Desktop

GenNorm

An integrative method to handle the three issues of the gene normalization (GN)…

An integrative method to handle the three issues of the gene normalization (GN) task. GenNorm uses three modules, the gene name recognition (GNR) module, the species assignation (SA) module and the…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.