GRENDEL specifications


Unique identifier OMICS_13531
Alternative name Gene REgulatory Network Decoding Evaluations tooL
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Input data Degree distributions, parameter distributions, experiment design, noise level
Output data Multiple sbml files, one for each rendition of the network, i.e. one for each sample, and a reference file which represents the wildtype; Multiple .prm files, one for each rendition of the network, this format corresponds to an internal representation; A net_topo.csv that is a binary valued adjacency matrix
Output format XML, CSV
Operating system Unix/Linux
Computer skills Advanced
Version 0.2
Stability Stable
Maintained Yes



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  • person_outline Michael Brent <>

GRENDEL article

GRENDEL institution(s)
Center for Genome Sciences and Department of Computer Science, Washington University, St Louis, MO, USA
GRENDEL funding source(s)
National Human Genome Research Institute (grant T32 HG000045) and Washington University

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