Gene Slider specifications

Information


Unique identifier OMICS_12733
Name Gene Slider
Interface Web user interface
Restrictions to use None
Input format FASTA formatted aligned sequences
Programming languages Javascript
Computer skills Basic
Stability Stable
Maintained Yes

Download


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Maintainer


  • person_outline Nicholas J. Provart

Information


Unique identifier OMICS_12733
Name Gene Slider
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input format FASTA formatted aligned sequences
Operating system Unix/Linux
Programming languages Javascript
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

Download


download.png
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Versioning


No version available

Maintainer


  • person_outline Nicholas J. Provart

Publication for Gene Slider

Gene Slider citation

library_books

Genomic screens identify a new phytobacterial microbe associated molecular pattern and the cognate Arabidopsis receptor like kinase that mediates its immune elicitation

2016
Genome Biol
PMCID: 4862170
PMID: 27160854
DOI: 10.1186/s13059-016-0955-7

[…] The protein sequence of the xup25 containing xanthine uracil permease gene from each species used was extracted and aligned using MUSCLE []. The alignment was uploaded to the Gene Slider module of the Bio-Analytical Resource for Plant Biology (bar.utoronto.ca) to produce the sequence logo. […]

Gene Slider institution(s)
Department of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, ON, Canada
Gene Slider funding source(s)
Genome Canada

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