Intron positions upon the mRNA transcript are sometimes remarkably conserved even across distantly related eukaryotic species. This has made the comparison of intron–exon architectures across orthologous transcripts a very useful tool for studying various evolutionary…
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EID
Dataset

EID Exon-Intron Database

Offers a comprehensive and convenient dataset of sequences for computational…

Offers a comprehensive and convenient dataset of sequences for computational biologists who study exon-intron gene structures and pre-mRNA splicing. The collection of exons and introns has been…

PIECE
Dataset

PIECE Plant Intron and Exon Comparison and Evolution

A plant gene structure comparison and evolution database with 25 species.…

A plant gene structure comparison and evolution database with 25 species. Annotated genes were extracted from the species and classified based on Pfam motif. Phylogenetic tree was reconstructed for…

JuncDB
Dataset

JuncDB

A database for comparing exonic architectures within sets of orthologous…

A database for comparing exonic architectures within sets of orthologous transcripts, offering user-friendly web interfaces and extensive visualization tools. JuncDB covers nearly 40 000 sets of…

ExoLocator
Dataset

ExoLocator

Aims to balance the goal of giving the complete picture of possible coding…

Aims to balance the goal of giving the complete picture of possible coding exons, with the need to stay grounded in terms of the verifiability of the actual function of the sequences it collects.…

K-shuff
Desktop

K-shuff

Identifies spatial clustering in a given dataset based on the reduced second…

Identifies spatial clustering in a given dataset based on the reduced second moment measure, or K-function. K-shuff is an algorithm for comparing the similarity of gene sequence libraries, providing…

ExInt
Dataset

ExInt Exon/Intron Database

Stores information of all GenBank eukaryotic entries containing an annotated…

Stores information of all GenBank eukaryotic entries containing an annotated intron sequence. Features in the database include: intron nucleotide sequence, amino acid sequence of the corresponding…

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