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Gene specifications


Unique identifier OMICS_01651
Name Gene
Alternative name Entrez Gene
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Maintained Yes


  • person_outline Terence D. Murphy

Additional information

Publications for Gene

Gene citations


Functional signaling and gene regulatory networks between the oocyte and the surrounding cumulus cells

BMC Genomics
PMCID: 5946446
PMID: 29747587
DOI: 10.1186/s12864-018-4738-2

[…] , DIP [] and IntAct [] and filtered them to retain the interactions from cow, human, mouse, pig, rabbit and rat. The gene or protein identifiers were then converted to Ensemble gene identifiers using Entrez [] gene-to-Ensembl mapping for BioGRID or UniProt-SwissProt []-to-Ensembl mapping for MINT, DIP and IntAct. The mapping of gene homology between each of the selected species and cow was obtaine […]


Regulatory protein SrpA controls phage infection and core cellular processes in Pseudomonas aeruginosa

Nat Commun
PMCID: 5945682
PMID: 29748556
DOI: 10.1038/s41467-018-04232-6

[…] . KEGG database was used to classify the genes with significant differential expression based on their functions. The online software DAVID Bioinformatics Resources 6.8 was used to convert gene ID to ENTREZ_GENE_ID ( The Pathway Enrichment Analysis tool Omicshare was used to classify genes at the level of KEGG_B_class (http […]


Novel Insights into Staphylococcus aureus Deep Bone Infections: the Involvement of Osteocytes

PMCID: 5915738
PMID: 29691335
DOI: 10.1128/mBio.00415-18

[…] r multiple tests (). Genes were considered significantly differentially expressed (DE) using an FDR-adjusted P value of <0.01 and an estimated log2 fold change (log2FC) beyond ±1, giving 1,526 unique Entrez Gene identifiers considered to be DE. The set of DE identifiers was tested for enrichment of Gene Ontology (GO) terms using the Fisher exact test and a set of background genes, defined as those […]


Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature

J Biomed Semantics
PMCID: 5896136
PMID: 29650041
DOI: 10.1186/s13326-018-0181-1

[…] udies have also carried out normalisation whilst making no distinction between genes/proteins. For example, Dogan et al. [] annotated genes/proteins of interest and manually added their corresponding Entrez Gene identifiers. There are, however, studies that have a list of multiple types of biomedical entities, such as PubTator [], and BEST []. PubTator considers 5 biomedical entities and BEST cons […]


A systematic and prospectively validated approach for identifying synergistic drug combinations against malaria

Malar J
PMCID: 5896032
PMID: 29642892
DOI: 10.1186/s12936-018-2294-5

[…] ext, pathways enriched by the targets of each compound were identified. For this purpose, 2010 human pathways and their associated genes from the Biosystems [] database were extracted. The equivalent Entrez gene IDs of each protein target of compounds were retrieved using Biomart []. For each compound a list of, on average, six gene IDs that the compound is predicted to interact with (the ‘compoun […]


Gene co expression networks in liver and muscle transcriptome reveal sex specific gene expression in lambs fed with a mix of essential oils

BMC Genomics
PMCID: 5885410
PMID: 29618337
DOI: 10.1186/s12864-018-4632-y

[…] s used to rank the genes.Genes from significant modules identified in the WGCNA analysis were used for functional enrichment analysis using ClueGO v.2.5.0 with a Cytoscape v3.4.0 plugin []. The ovine Entrez gene IDs from each module was used as input and all ovine Entrez gene IDs included in the co-expression analysis was used as Custom Reference Set.Significance threshold for KEGG pathway and GO […]


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Gene institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
Gene funding source(s)
Supported by Intramural Research Program of the National Institutes of Health, National Library of Medicine.

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