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Gene structure visualization software tools | Genome annotation

Visualizing genes’ structure and annotated features helps biologists to investigate their function and evolution intuitively.

Source text:
(Hu et al., 2015) GSDS 2.0: an upgraded gene feature visualization server. Bioinformatics.

GSDS
Web

GSDS Gene Structure Display Server

It is designed for the visualization of gene features, such as the composition…

It is designed for the visualization of gene features, such as the composition and position of exons, introns, and conserved elements .etc. The input could be sequences, GenBank Accession Number (or…

GATExplorer
Dataset

GATExplorer Genomic and Transcriptomic Explorer

Contains a gene loci browser with nucleotide level mappings of oligo probes…

Contains a gene loci browser with nucleotide level mappings of oligo probes from expression microarrays. GATExplorer enables interactive exploration of gene loci, transcripts and exons of human,…

ProtAnnot
Desktop

ProtAnnot

Enables fast, efficient visual analysis of the impact of alternative…

Enables fast, efficient visual analysis of the impact of alternative transcription on proteins by extending standard genome browser iconography, in which linked blocks represent transcript structures…

GenePainter
Desktop
Web

GenePainter

A standalone application for mapping gene structure information onto protein…

A standalone application for mapping gene structure information onto protein multiple sequence alignments. Based on the multiple sequence alignments the gene structures are aligned down to single…

FeatureStack
Desktop

FeatureStack

A Perl module for the automatic generation of multi-gene images. FeatureStack…

A Perl module for the automatic generation of multi-gene images. FeatureStack takes BioPerl-compliant gene or transcript features as input and renders them side by side using a user-defined BioPerl…

BRCA1 Circos
Web

BRCA1 Circos

A visualization resource that compiles and displays functional data on all…

A visualization resource that compiles and displays functional data on all documented BRCA1 missense variants. This resource provides an interactive display of data from published BRCA1 functional…

GPViz
Desktop
Web

GPViz

A versatile Java-based software for dynamic gene-centered visualization of…

A versatile Java-based software for dynamic gene-centered visualization of genomic regions and/or variants. User-defined data can be loaded in common formats as resulting from analysis workflows used…

Exalign
Desktop
Web

Exalign

A tool that performs alignments of gene exonic structures. In particular…

A tool that performs alignments of gene exonic structures. In particular Exalign works by aligning arrays representing the exon lengths of genes. While the aligning algorithms used by Exalign are the…

GSDraw
Web

GSDraw Gene Structure Draw Server

A web server for gene family to draw gene structure schematic diagrams. Users…

A web server for gene family to draw gene structure schematic diagrams. Users can submit genomic, CDS and transcript sequences. GSDraw uses this information to obtain the gene structure, protein…

AnnotationSketc…
Desktop

AnnotationSketch

Provides layout and drawing capabilities for annotation features.…

Provides layout and drawing capabilities for annotation features. AnnotationSketch supports several common input and output formats and can easily be integrated into custom C applications. It allows…

GECA
Desktop
Web

GECA

A fast, user-friendly and freely-available tool for representing gene…

A fast, user-friendly and freely-available tool for representing gene exon/intron organization and highlighting changes in gene structure among members of a gene family. It relies on protein…

Gene Spaghetti
Desktop

Gene Spaghetti

Allows users to observe base and amino acid usage in a genome. Gene Spaghetti…

Allows users to observe base and amino acid usage in a genome. Gene Spaghetti is a standalone software that utilizes a sliding Gaussian window to evaluate local base usage. It supports multiple…

Intervene
Desktop

Intervene

Provides an easy and automated interface for effective intersection and…

Provides an easy and automated interface for effective intersection and visualization of genomic region sets, thus facilitating their analysis and interpretation. Intervene contains three modules:…

FancyGene
Web

FancyGene

A fast and user-friendly web-based tool for producing images of one or more…

A fast and user-friendly web-based tool for producing images of one or more genes directly on the corresponding genomic locus. Starting from a variety of input formats, FancyGene rebuilds the basic…

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