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Gene Wiki specifications


Unique identifier OMICS_21016
Name Gene Wiki
Restrictions to use None
Community driven Yes
Data access Browse
User data submission Allowed
Maintained Yes


  • Primates
    • Homo sapiens


  • person_outline Andrew I. Su
  • person_outline Benjamin Good

Publications for Gene Wiki

Gene Wiki citations


A customized Web portal for the genome of the ctenophore Mnemiopsis leidyi

BMC Genomics
PMCID: 4234515
PMID: 24773765
DOI: 10.1186/1471-2164-15-316

[…] fic community to provide further gene annotation for isoforms, in situ images, references, and other notes for each gene. Users interested in supplementing our gene model annotation at the Mnemiopsis Gene Wiki pages must first create an account and log in prior to submitting their contributions. In-house subject matter expert data curators are notified by e-mail following the creation of a new use […]


Linking genes to diseases with a SNPedia Gene Wiki mashup

J Biomed Semantics
PMCID: 3337266
PMID: 22541597
DOI: 10.1186/2041-1480-3-S1-S6

[…] ith other RDF resources, and to take advantage of Semantic Web reasoning systems. (SPARQL is the standard query language for RDF.)As one example, the 479 gene-disease pairs in the overlap between the Gene Wiki and SNPedia can be identified with the following SPARQL query executed in a triplestore.PREFIX wiki: PREFIX property:


The Transcription Factor Encyclopedia

Genome Biol
PMCID: 3439975
PMID: 22458515
DOI: 10.1186/gb-2012-13-3-r24

[…] een proven successful for small communities with specialized interests and need for peer-reviewed content, perhaps reflecting the limited time available from the small cadre of qualified experts. The Gene Wiki project within Wikipedia has been the most advanced effort, providing automated stub articles for many genes within the confines of Wikipedia []. However, the absence of a rigorous and enfor […]


Mining the Gene Wiki for functional genomic knowledge

BMC Genomics
PMCID: 3271090
PMID: 22165947
DOI: 10.1186/1471-2164-12-603

[…] and by the PubMed mining system.• assess the probability that the two gene sets are independent using Fisher's exact testc. expand the PubMed-mined annotation set with the annotations mined from the Gene Wiki and repeat the comparison to the GOA-derived gene setThe results from steps 4b and 4c were compared to quantify the impact that the Gene Wiki-derived annotations had on gene set enrichment a […]


Current Trends and New Challenges of Databases and Web Applications for Systems Driven Biological Research

Front Physiol
PMCID: 3059952
PMID: 21423387
DOI: 10.3389/fphys.2010.00147

[…] Web project in which the content is both created and edited by users. Owing to wikis success there are considerable efforts in biological community for porting Wikipedia into biological domain (e.g., Gene Wiki, Huss et al., ; WikiProtein, Mons et al., ; Wiki Pathway, Pico et al., ).In order to facilitate interaction between the user and the computers on the Web, both data and interface used by use […]


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Gene Wiki institution(s)
Department of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA; Department of Computer Science, University of California, Santa Cruz, CA, USA
Gene Wiki funding source(s)
Supported by National Institutes of Health (GM089820 and GM083924).

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