GeneALaCart statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GeneALaCart

Tool usage distribution map

This map represents all the scientific publications referring to GeneALaCart per scientific context
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Associated diseases

This word cloud represents GeneALaCart usage per disease context

Popular tool citations

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GeneALaCart specifications


Unique identifier OMICS_18328
Name GeneALaCart
Interface Web user interface, Application programming interface
Restrictions to use License purchase required
Input data A list (batch) of gene symbols or identifiers, together with the user's selected data fields of interest.
Output data A tabulated file of annotations for the gene set.
Output format TSV
Computer skills Basic
Stability Stable
Maintained Yes

GeneALaCart citations


Activation of apoptosis in NAF 1 deficient human epithelial breast cancer cells

PMCID: 4732299
PMID: 26621032
DOI: 10.1242/jcs.178293
call_split See protocol

[…] es were used for the transcriptomics and metabolomics data analysis: the KEGG Search and Color Pathway tool (; GeneCards, The Human Gene Compendium (; and GeneALaCart ( These resources were used to identify specific pathways that were altered in cells lacking NAF-1 in order to place the different transcripts and metabolite […]


Temporal proteomic analysis of HIV infection reveals remodelling of the host phosphoproteome by lentiviral Vif variants

PMCID: 5085607
PMID: 27690223
DOI: 10.7554/eLife.18296.031

[…] scores > 1.3 (equivalent to a geometric means of all included enrichment p values<0.05) were considered significant.For the interactive spreadsheet of all TMT data, gene name aliases were added using GeneALaCart (accessed on 4/5/16 at ().For comparison with PMP, Gene Ontology Cellular Component (GOCC) terms were imported using Perseus (downloaded from htt […]


Quantitative Temporal Viromics: An Approach to Investigate Host Pathogen Interaction

PMCID: 4048463
PMID: 24906157
DOI: 10.1016/j.cell.2014.04.028

[…] fied proteins and normalized assuming equal protein loading across all 8 or 10 samples. Gene Ontology and KEGG terms () were added using Perseus version (). Gene name aliases were added using GeneALaCart ( (). The one-way ANOVA test was used to identify proteins differentially expressed over time in experiments PM1 and WCL1, and was corrected using the method of Benjamini […]


Pathogens and host immunity in the ancient human oral cavity

Nat Genet
PMCID: 3969750
PMID: 24562188
DOI: 10.1038/ng.2906

[…] ations resolving to 589 proteins identified with >99% confidence and ≥2 unique peptides. Contaminants were identified and removed (). Metadata for human proteins was retrieved using the GeneCards v.3 GeneALaCart tool and used to manually classify each protein into six categories: innate immune system, adaptive immune system, blood coagulation, digestion, structure and support, and other. Protein i […]


Identification of 526 Conserved Metazoan Genetic Innovations Exposes a New Role for Cofactor E like in Neuronal Microtubule Homeostasis

PLoS Genet
PMCID: 3789837
PMID: 24098140
DOI: 10.1371/journal.pgen.1003804

[…] To determine the genes that were completely uncharacterized we combined several approaches. First, using Genealacart, the batch querying application based on Genecards database ( , we searched for human genes that had no functional annotation from the UniprotKB database. Second, using w […]


In silico human genomics with GeneCards

Hum Genomics
PMCID: 3525253
PMID: 22155609
DOI: 10.1186/1479-7364-5-6-709

[…] eneCards, which helped to decide the most likely gene candidates and eventually led to successful mutation discovery for the diseases.In this context, a fundamental tool is the GeneCards Suite member GeneALaCart, a gene-set-orientated batch query engine []. Here, a set of candidate genes is entered along with a list of requested fields. A convenient tabular output helps to identify and sort the ca […]

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