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chevron_left Functional annotation Gene orthology prediction Gene Ontology annotation Annotation SNP/SNV annotation Transcriptome annotation chevron_right
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GeneALaCart specifications

Information


Unique identifier OMICS_18328
Name GeneALaCart
Interface Web user interface, Application programming interface
Restrictions to use License purchase required
Input data A list (batch) of gene symbols or identifiers, together with the user's selected data fields of interest.
Output data A tabulated file of annotations for the gene set.
Output format TSV
Computer skills Basic
Stability Stable
Maintained Yes

GeneALaCart citations

 (11)
library_books

Germline variation in ADAMTSL1 is associated with prognosis following breast cancer treatment in young women

2017
PMCID: 5696339
PMID: 29158497
DOI: 10.1038/s41467-017-01775-y

[…] snps with support from correlated snps (snps r 2 ≥ 0.5, within 500 kb). priority, but not exclusivity, was then given to index snps that were close to a relevant gene according to annotation from genealacart (https://genealacart.genecards.org/). two shortlists of index snps were made which used either a stringent (index snp p meta ≤ 0.001 and correlated snp p meta ≤ 0.01) or moderate set […]

library_books

The human olfactory transcriptome

2016
PMCID: 4982115
PMID: 27515280
DOI: 10.1186/s12864-016-2960-3

[…] annotation [] of or genes and pseudogenes. to enable downstream calculations, 0 fpkm values were set to 0.003. mouse data were analyzed with the same procedures using mm10 as a reference genome. the genealacart tool of the genecards database [] was used to find the mouse ortholog of each human gene., to test the statistical significance of over expression in the olfactory epithelium versus […]

library_books

Activation of apoptosis in NAF 1 deficient human epithelial breast cancer cells

2016
PMCID: 4732299
PMID: 26621032
DOI: 10.1242/jcs.178293

[…] were used for the transcriptomics and metabolomics data analysis: the kegg search and color pathway tool (http://www.genome.jp/kegg/); genecards, the human gene compendium (www.genecards.org); and genealacart (www.genealacart.genecards.org). these resources were used to identify specific pathways that were altered in cells lacking naf-1 in order to place the different transcripts […]

library_books

Temporal proteomic analysis of HIV infection reveals remodelling of the host phosphoproteome by lentiviral Vif variants

2016
PMCID: 5085607
PMID: 27690223
DOI: 10.7554/eLife.18296.031

[…] gt; 1.3 (equivalent to a geometric means of all included enrichment p values<0.05) were considered significant., for the interactive spreadsheet of all tmt data, gene name aliases were added using genealacart (accessed on 4/5/16 at https://genealacart.genecards.org) ()., for comparison with pmp, gene ontology cellular component (gocc) terms were imported using perseus 1.4.1.3 (downloaded from h […]

library_books

Pathogens and host immunity in the ancient human oral cavity

2014
PMCID: 3969750
PMID: 24562188
DOI: 10.1038/ng.2906

[…] resolving to 589 proteins identified with >99% confidence and ≥2 unique peptides. contaminants were identified and removed (). metadata for human proteins was retrieved using the genecards v.3 genealacart tool and used to manually classify each protein into six categories: innate immune system, adaptive immune system, blood coagulation, digestion, structure and support, and other. protein […]

library_books

Whole Genome Sequence of a Turkish Individual

2014
PMCID: 3887021
PMID: 24416366
DOI: 10.1371/journal.pone.0085233

[…] in , we list these genes along with their effects and annotations. in , we show the 23 well-characterized genes that were affected by a novel nonsense snp. gene annotations were obtained using the genealacart tool of the genecards suite (www.genecards.org) ., we identified 713,640 indels, which consisted of 341,382 insertions and 372,258 deletions. of these indels, 159,593 (or 22%) were found […]


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