GeneALaCart statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GeneALaCart
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Tool usage distribution map

This map represents all the scientific publications referring to GeneALaCart per scientific context
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Associated diseases

This word cloud represents GeneALaCart usage per disease context
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Popular tool citations

chevron_left Functional annotation Gene orthology prediction Gene Ontology annotation Annotation SNP/SNV annotation Transcriptome annotation chevron_right
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Protocols

GeneALaCart specifications

Information


Unique identifier OMICS_18328
Name GeneALaCart
Interface Web user interface, Application programming interface
Restrictions to use License purchase required
Input data A list (batch) of gene symbols or identifiers, together with the user's selected data fields of interest.
Output data A tabulated file of annotations for the gene set.
Output format TSV
Computer skills Basic
Stability Stable
Maintained Yes

GeneALaCart citations

 (7)
call_split

Activation of apoptosis in NAF 1 deficient human epithelial breast cancer cells

2016
PMCID: 4732299
PMID: 26621032
DOI: 10.1242/jcs.178293
call_split See protocol

[…] es were used for the transcriptomics and metabolomics data analysis: the KEGG Search and Color Pathway tool (http://www.genome.jp/kegg/); GeneCards, The Human Gene Compendium (www.genecards.org); and GeneALaCart (www.genealacart.genecards.org). These resources were used to identify specific pathways that were altered in cells lacking NAF-1 in order to place the different transcripts and metabolite […]

library_books

Temporal proteomic analysis of HIV infection reveals remodelling of the host phosphoproteome by lentiviral Vif variants

2016
eLife
PMCID: 5085607
PMID: 27690223
DOI: 10.7554/eLife.18296.031

[…] scores > 1.3 (equivalent to a geometric means of all included enrichment p values<0.05) were considered significant.For the interactive spreadsheet of all TMT data, gene name aliases were added using GeneALaCart (accessed on 4/5/16 at https://genealacart.genecards.org) ().For comparison with PMP, Gene Ontology Cellular Component (GOCC) terms were imported using Perseus 1.4.1.3 (downloaded from htt […]

library_books

Quantitative Temporal Viromics: An Approach to Investigate Host Pathogen Interaction

2014
Cell
PMCID: 4048463
PMID: 24906157
DOI: 10.1016/j.cell.2014.04.028

[…] fied proteins and normalized assuming equal protein loading across all 8 or 10 samples. Gene Ontology and KEGG terms () were added using Perseus version 1.4.1.3 (). Gene name aliases were added using GeneALaCart (www.genecards.org) (). The one-way ANOVA test was used to identify proteins differentially expressed over time in experiments PM1 and WCL1, and was corrected using the method of Benjamini […]

library_books

Pathogens and host immunity in the ancient human oral cavity

2014
Nat Genet
PMCID: 3969750
PMID: 24562188
DOI: 10.1038/ng.2906

[…] ations resolving to 589 proteins identified with >99% confidence and ≥2 unique peptides. Contaminants were identified and removed (). Metadata for human proteins was retrieved using the GeneCards v.3 GeneALaCart tool and used to manually classify each protein into six categories: innate immune system, adaptive immune system, blood coagulation, digestion, structure and support, and other. Protein i […]

library_books

Identification of 526 Conserved Metazoan Genetic Innovations Exposes a New Role for Cofactor E like in Neuronal Microtubule Homeostasis

2013
PLoS Genet
PMCID: 3789837
PMID: 24098140
DOI: 10.1371/journal.pgen.1003804

[…] To determine the genes that were completely uncharacterized we combined several approaches. First, using Genealacart, the batch querying application based on Genecards database (www.genecards.org) , we searched for human genes that had no functional annotation from the UniprotKB database. Second, using w […]

library_books

In silico human genomics with GeneCards

2011
Hum Genomics
PMCID: 3525253
PMID: 22155609
DOI: 10.1186/1479-7364-5-6-709

[…] eneCards, which helped to decide the most likely gene candidates and eventually led to successful mutation discovery for the diseases.In this context, a fundamental tool is the GeneCards Suite member GeneALaCart, a gene-set-orientated batch query engine []. Here, a set of candidate genes is entered along with a list of requested fields. A convenient tabular output helps to identify and sort the ca […]


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