Gubbins specifications

Unique identifier:
OMICS_14386
Software type:
Package/Module
Restrictions to use:
None
Output format:
EMBL, GFF3, VCF, CSV, FASTA, PHYLIP, TRE
Programming languages:
C, Python
Computer skills:
Advanced
Stability:
Stable
Name:
Genealogies Unbiased By recomBinations In Nucleotide Sequences
Interface:
Command line interface
Input data:
A whole genome alignment with polymorphic sites.
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
2.2.0
Maintained:
Yes

versioning

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Gubbins distribution

download

Gubbins support

Documentation

Maintainer

  • Simon Harris <>

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Credits

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Publications

Institution(s)

Pathogen Genomics, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Center for Communicable Disease Dynamics, Harvard School of Public Health, Boston, MA, USA; Department of Infectious Disease Epidemiology, Imperial College London, St. Mary’s Campus, London, UK; Cardiff School of Biosciences, Sir Martin Evans Building, Cardiff, UK; School of Computing, Engineering and Mathematics, University of Brighton, Brighton, UK; Department of Medicine, University of Cambridge, Addenbrooke’s Hospital, Cambridge, UK

Funding source(s)

This work was supported by Wellcome Trust [098051].

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