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GeneAtlas specifications

Information


Unique identifier OMICS_20360
Name GeneAtlas
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Albert Tenesa

Publication for GeneAtlas

GeneAtlas citations

 (19)
library_books

“Positive Regulation of RNA Metabolic Process” Ontology Group Highly Regulated in Porcine Oocytes Matured In Vitro: A Microarray Approach

2018
Biomed Res Int
PMCID: 5818922
PMID: 29546053
DOI: 10.1155/2018/2863068

[…] ments of cDNA (5.5 μg) were hybridized to Affymetrix® Porcine Gene 1.1 ST Array Strip (48°C/20 h). Subsequent washing and staining were performed according to the technical protocol, using Affymetrix GeneAtlas Fluidics Station. The array strips were scanned employing Imaging Station of GeneAtlas System. The quality of gene expression data was checked according to quality control criteria provided […]

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Expression Profile of Genes Regulating Steroid Biosynthesis and Metabolism in Human Ovarian Granulosa Cells—A Primary Culture Approach

2017
Int J Mol Sci
PMCID: 5751275
PMID: 29232835
DOI: 10.3390/ijms18122673
call_split See protocol

[…] hybridized to the Affymetrix® Human Genome U219 Array (48 °C/20 h; Affymetrix, Santa Clara, CA, USA). Microarrays were then washed and stained according to the technical protocol using the Affymetrix GeneAtlas Fluidics Station. The array strips were scanned employing the Imaging Station of the GeneAtlas System. Preliminary analysis of the scanned chips was performed using Affymetrix GeneAtlasTM Op […]

library_books

Loss of liver specific and sexually dimorphic gene expression by aryl hydrocarbon receptor activation in C57BL/6 mice

2017
PLoS One
PMCID: 5602546
PMID: 28922406
DOI: 10.1371/journal.pone.0184842

[…] To further explore the effect of TCDD on hepatic gene expression, 181 genes primarily expressed in the liver were identified using 96 GeneAtlas MOE430 datasets representing tissue/cell types from naïve male mice []. These 181 genes are subsequently referred to as “liver-specific” based on a microarray signal difference of ≥5,000 uni […]

library_books

High density genotyping of immune related loci identifies new SLE risk variants in individuals with Asian ancestry

2016
Nat Genet
PMCID: 4767573
PMID: 26808113
DOI: 10.1038/ng.3496

[…] ell type-specific expression of novel and replicated SLE loci (57 SNPs), we used a previously reported approach, described as follows. We used normalized expression data from 79 human cell types from GeneAtlas (curated by the Genomic Institute of the Novartis Research Foundation), as well as from 249 mouse cell types sorted by FACS and assayed at least three times from the Immunological Genome Pro […]

library_books

Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues

2016
PeerJ
PMCID: 4793311
PMID: 26989612
DOI: 10.7717/peerj.1762

[…] 0 (). When multiple biomedical functions were listed, functions related to gastrointestinal activity were prioritized for annotation. Fourthly, for a subset of genes Unigene (), Genevestigator () and GeneAtlas () were used to identify transcript expression patterns in cattle and humans respectively. Protein sequences analysis was performed using Radar (), to identify amino acid sequence repeats, a […]

library_books

Gene expression profiling distinguishes proneural glioma stem cells from mesenchymal glioma stem cells

2015
Genom Data
PMCID: 4523279
PMID: 26251826
DOI: 10.1016/j.gdata.2015.07.007

[…] Comparative analysis of mRNA expression was performed using the Human U219 Array Strip and the Affymetrix GeneAtlas system, as per the manufacturer's instructions. Microarray analysis for each of the cell cultures (in triplicate) was accomplished with 100 ng purified total RNA (described above) as the ini […]

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GeneAtlas institution(s)
The Roslin Institute, Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Easter Bush Campus, Midlothian, UK; MRC Human Genetics Unit at the MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Western General Hospital, Crewe Road South, Edinburgh, UK
GeneAtlas funding source(s)
Supported by the Roslin Institute Strategic Programme Grant from the BBSRC (BB/P013732/1) and MRC grant (MR/N003179/1) and by the Medical Research Council.

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