geneAttribution specifications

Information


Unique identifier OMICS_14574
Name geneAttribution
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The variant-gene distance modeled as an exponential distribution, the expression quantitative trait loci (eQTLs) linking genotype to gene expression, the Hi-C genome conformation assays linking gene promoters to distal regions
Input format BED
Output data The most likely candidate genes
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.6.0
Stability Stable
Requirements
BiocGenerics, IRanges, GenomicRanges, utils, testthat, GenomeInfoDb, rtracklayer, GenomicFeatures, rmarkdown, knitr, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene
Maintained Yes

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Maintainer


  • person_outline Arthur Wuster <>

Publication for geneAttribution

geneAttribution institution(s)
Department of Human Genetics, Genentech Inc, South San Francisco, CA, USA; Department of Bioinformatics and Computational Biology, Genentech Inc, South San Francisco, CA, USA

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