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Number of citations per year for the bioinformatics software tool GeneChaser
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GeneChaser specifications

Information


Unique identifier OMICS_04083
Name GeneChaser
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for GeneChaser

GeneChaser citations

 (10)
library_books

The CO Regulation Database (CORD): A Tool to Identify Coordinately Expressed Genes

2014
PLoS One
PMCID: 3944024
PMID: 24599084
DOI: 10.1371/journal.pone.0090408

[…] differentially regulated or determining gene-gene correlation using expression value across a defined microarray platform. Several gene-centered added-value databases are freely assessable including GeneChaser and the Gene Expression Atlas , . Both these tools allow the operator to assess in which experiments a gene may be differentially expressed. COXPRESdb and the Multi-experiment Matrix are tw […]

library_books

A Novel Protein Kinase Like Domain in a Selenoprotein, Widespread in the Tree of Life

2012
PLoS One
PMCID: 3281104
PMID: 22359664
DOI: 10.1371/journal.pone.0032138

[…] Gs tested (all that were observed in the SELO neighbourhoods).Gene coexpression was studied using the STRING tool . Gene expression data was extracted for SELO genes using the BioGPS system , and the Genechaser and GEO databases , . […]

library_books

Immune Response and Mitochondrial Metabolism Are Commonly Deregulated in DMD and Aging Skeletal Muscle

2011
PLoS One
PMCID: 3212519
PMID: 22096509
DOI: 10.1371/journal.pone.0026952

[…] We identified GEO public datasets in which significant expression variations were observed using GeneChaser server . […]

library_books

Discovering biological connections between experimental conditions based on common patterns of differential gene expression

2011
BMC Bioinformatics
PMCID: 3203354
PMID: 21951600
DOI: 10.1186/1471-2105-12-381

[…] nally, we chose to compare openSESAME with two other methods that relate gene expression differences in GEO-deposited data to a query signature. One of the key differences between openSESAME and both GeneChaser [] and MARQ [] is that, unlike openSESAME, these methods precompute the degree of differential expression associated with phenotypic comparisons gleaned from sample annotation information t […]

library_books

Computational Integration of Homolog and Pathway Gene Module Expression Reveals General Stemness Signatures

2011
PLoS One
PMCID: 3084730
PMID: 21559491
DOI: 10.1371/journal.pone.0018968

[…] es with large-scale efforts to systematically extract differentially expressed genes in many different conditions represented in current microarray gene expression repositories, such as Oncomine and GeneChaser . It is complementary to previous approaches to uncover the mechanisms of pluri- and multi-potency maintenance, such as the development of the PluriNet .In this study, we focused our analys […]

library_books

Meta analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns

2011
BMC Genomics
PMCID: 3049149
PMID: 21324190
DOI: 10.1186/1471-2164-12-113

[…] for review]. A major problem was the low amount of meaningful raw data deposited in public databases []. A more advanced comparison strategy of significant gene lists was provided by Oncomine [] and GeneChaser (GENE CHAnge browSER) []. Oncomine is a comprehensive and expertly annotated database of gene expression studies. The collection comprises 25,447 samples in 360 experiments taken from 40 ca […]


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GeneChaser institution(s)
Stanford Center for Biomedical Informatics Research, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA

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