GeneChaser statistics

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Associated diseases

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Protocols

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GeneChaser specifications

Information


Unique identifier OMICS_04083
Name GeneChaser
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for GeneChaser

GeneChaser in pipeline

2011
PMCID: 3212519
PMID: 22096509
DOI: 10.1371/journal.pone.0026952

[…] multiple independent datasets using gemma on the basis of their expression profiles correlation , ., we identified geo public datasets in which significant expression variations were observed using genechaser server ., for each dmd/aged validated cluster of deg, the 50 significant overlapping gene sets were sought in a large collection of transcriptional signatures using tbrowser ., functional […]


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GeneChaser in publications

 (6)
PMCID: 3281104
PMID: 22359664
DOI: 10.1371/journal.pone.0032138

[…] expression in liver is striking (2 and 10 times the median tissue expression, respectively in the two species)., no striking expression changes in disease were identified for human selo gene in the genechaser or gene expression omnibus databases., in yeast, the expression of selo homologue, the fmp40 gene, is upregulated upon peroxide treatment . it is also upregulated in aerobic milieu versus […]

PMCID: 3212519
PMID: 22096509
DOI: 10.1371/journal.pone.0026952

[…] multiple independent datasets using gemma on the basis of their expression profiles correlation , ., we identified geo public datasets in which significant expression variations were observed using genechaser server ., for each dmd/aged validated cluster of deg, the 50 significant overlapping gene sets were sought in a large collection of transcriptional signatures using tbrowser ., functional […]

PMCID: 3203354
PMID: 21951600
DOI: 10.1186/1471-2105-12-381

[…] to further examine the performance of opensesame, we compared the results of the opensesame queries performed with the e2 and p63 signatures with the results of similar queries performed using genechaser [] and marq [], two web-based applications that identify experimental comparisons that are relevant to an expression signature of interest. we first translated the expression signatures […]

PMCID: 3084730
PMID: 21559491
DOI: 10.1371/journal.pone.0018968

[…] with large-scale efforts to systematically extract differentially expressed genes in many different conditions represented in current microarray gene expression repositories, such as oncomine and genechaser . it is complementary to previous approaches to uncover the mechanisms of pluri- and multi-potency maintenance, such as the development of the plurinet ., in this study, we focused […]

PMCID: 3091736
PMID: 20964819
DOI: 10.1186/1471-2164-11-590

[…] genes would show similar expression changes. the only disease-related datasets where all the three p-dudes genes showed significant and consistent expression changes (as determined by q-values in genechaser) were two glioblastoma expression datasets gds1813 and gds1962[,]. comparisons considered here involved samples classified as "normal vs glioblastoma" and "non-tumor vs glioblastomas" […]


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GeneChaser institution(s)
Stanford Center for Biomedical Informatics Research, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA

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