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GeneClust specifications

Information


Unique identifier OMICS_04671
Name GeneClust
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C, Java, R
Computer skills Advanced
Version 1.0.2
Stability Stable
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline Bradley Broom
  • person_outline Kim-Anh Do

Information


Unique identifier OMICS_04671
Name GeneClust
Interface Web user interface
Restrictions to use None
Programming languages C, Java, Javascript, R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Bradley Broom
  • person_outline Kim-Anh Do

Publication for GeneClust

library_books

GeneClust.

2003
DOI: 10.1007/0-387-21679-0_15

GeneClust citation

library_books

The evolution of the major histocompatibility complex in upstream versus downstream river populations of the longnose dace

2017
Ecol Evol
PMCID: 5433983
PMID: 28515867
DOI: 10.1002/ece3.2839

[…] nce using Euclidean distance (the shortest geographical distance) between population pairs, because populations may not have colonized via current waterways after the last glacial maxima. We used the Geneclust package (Ancelet, ) in R to estimate pairwise F ST between populations (Weir & Cockerham, ). All geographical distances (Euclidean and river) were log‐transformed, and all genetic distances […]


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GeneClust funding source(s)
Supported by the National Institute of Health via the University of Texas SPORE in Prostate Cancer (CA90270) and the Early Detection Research Network (Grant CA99007).

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