GeneCodis statistics

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Protocols

GeneCodis specifications

Information


Unique identifier OMICS_02221
Name GeneCodis
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publications for GeneCodis

GeneCodis citations

 (109)
library_books

Bioinformatics based identification of potential microRNA biomarkers in frequent and non frequent exacerbators of COPD

2018
PMCID: 5909781
PMID: 29713155
DOI: 10.2147/COPD.S163459

[…] GeneCodis is a web-based tool for comprehensive analysis of gene annotations, encompassing GO, Panther and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, InterPro Motifs and Transcription Fa […]

library_books

Genome wide meta analysis identifies five new susceptibility loci for pancreatic cancer

2018
Nat Commun
PMCID: 5805680
PMID: 29422604
DOI: 10.1038/s41467-018-02942-5

[…] were significant at false discovery rate (FDR) < 0.05 (data not shown) but significant tissue enrichment is shown in Supplementary Table . Additional gene set enrichment analysis was performed using GeneCodis3 (http://genecodis.cnb.csic.es/). Genes (n = 65) were located in the currently known pancreatic cancer risk loci identified in subjects of European descent (for genes located +/−100 kb from […]

call_split

ATP Binding Cassette Subfamily A Member 2 (ABCA2) Expression and Methylation are Associated with Alzheimer’s Disease

2017
PMCID: 5733562
PMID: 29224028
DOI: 10.12659/MSM.905524
call_split See protocol

[…] lation coefficients above 0.5 (P value was less than 1E-20) were selected and overlapped with the DEGs whose P value was less than 1E-20. The final obtained genes were subjected to GO analysis in the GeneCoDis3 online database (http://genecodis.cnb.csic.es). […]

library_books

Identification of common key genes in breast, lung and prostate cancer and exploration of their heterogeneous expression

2017
PMCID: 5776944
PMID: 29434863
DOI: 10.3892/ol.2017.7508

[…] ize common genetic indicators/biomarkers in lung, breast and prostate cancer, and to confirm their relevance in cancer by exploring NCBI citations using TARGETgene and by functional annotations using GENECODIS and DAVID. A robust gene set involved in the three cancer types was obtained, as microarray and RNA-Seq data were analyzed in combination in the present study. The RNA-Seq analysis proposed […]

call_split

Prognostic impact of a novel gene expression profile classifier for the discrimination between metastatic and non metastatic primary colorectal cancer tumors

2017
Oncotarget
PMCID: 5746100
PMID: 29296198
DOI: 10.18632/oncotarget.22591
call_split See protocol

[…] enes were selected based on an absolute fold change cut-off of ≥2.0. Functional enrichment analysis of deregulated genes associated to molecular (KEGG) pathways was based on simultaneous usage of the GeneCodis [] and the DIANA-miRPath v.3 [] software.In order to identify the best combination of genes to discriminate between the GEP of metastatic (Group 1) and non-metastatic (Group 2) sCRC primary […]

library_books

Dynamic changes in eIF4F mRNA interactions revealed by global analyses of environmental stress responses

2017
Genome Biol
PMCID: 5660459
PMID: 29078784
DOI: 10.1186/s13059-017-1338-4

[…] GO analyses of RNA gene lists from edgeR files were done using the web-based GeneCodis tools (http://genecodis.cnb.csic.es/) to assess the yeast GO Slim functional enrichments of eIF4F associated mRNAs against a reference list of 5348 common yeast ORFs [, ]. All reported P val […]

Citations

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GeneCodis institution(s)
Functional Bioinformatics Group, National Center for Biotechnology (CNB-CSIC), Madrid, Spain

GeneCodis review

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Web
a good website for GO and KEGG pathway analysis