GeneCodis pipeline

GeneCodis specifications

Information


Unique identifier OMICS_02221
Name GeneCodis
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for GeneCodis

GeneCodis IN pipelines

 (16)
2017
PMCID: 5227060
PMID: 27908864
DOI: 10.1302/2046-3758.512.BJR-2016-0073.R1

[…] analysis were performed to detect the biological functions and potential pathway of degs. go-rilla,23 a web-accessible programme was used for go enrichment analysis. the online-based software genecodis was used24 in pathway enrichment analysis based on the kegg pathway database which is a recognised and comprehensive database including an extensive array of biochemistry pathways.25, […]

2017
PMCID: 5237304
PMID: 28086821
DOI: 10.1186/s13000-016-0596-x

[…] genes (degs). heat map analysis was conducted using the “heatmap.2” function of the r/bioconductor package “gplots” [13]., the go and pathway enrichment was analyzed via the online software genecodis to facilitate the interpretation of biological roles of degs (http://genecodis.cnb.csic.es) [14]. the go functions of the degs were determined according to different categories including […]

2017
PMCID: 5237304
PMID: 28086821
DOI: 10.1186/s13000-016-0596-x

[…] of the r/bioconductor package “gplots” [13]., the go and pathway enrichment was analyzed via the online software genecodis to facilitate the interpretation of biological roles of degs (http://genecodis.cnb.csic.es) [14]. the go functions of the degs were determined according to different categories including biological process, molecular functions, and cellular components. in addition, […]

2017
PMCID: 5316826
PMID: 28193997
DOI: 10.1038/ncomms14127

[…] located above (red) or below (blue) the mean, respectively). adjusted p values were corrected for multiple testing using the benjamini–hochberg method. gene ontology analysis was performed using the genecodis application66., c57bl/6-ins2akita/j (ref. 52), tgif1tm1apah (ref. 51) and tg(sox2-cre)1amc/j (ref. 37) (jax laboratories) mouse strains were previously described. the mouse […]

2017
PMCID: 5465468
PMID: 28595632
DOI: 10.1186/s13000-017-0630-7

[…] analysis and kyoto encyclopedia of genes and genomes (kegg) pathway analysis were performed to annotate the biological function of the differentially expressed genes using the online software genecodis [19]. a cut-off of fdr was defined at 0.05., to reveal the interactions of selected genes at molecular level, ppis network was established based on the online database [20, 21]. biological […]

GeneCodis institution(s)
Functional Bioinformatics Group, National Center for Biotechnology (CNB-CSIC), Madrid, Spain

GeneCodis review

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k.4ughi

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Web
a good website for GO and KEGG pathway analysis