GeneCodis statistics

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GeneCodis specifications


Unique identifier OMICS_02221
Name GeneCodis
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publications for GeneCodis

GeneCodis citations


Bioinformatics based identification of potential microRNA biomarkers in frequent and non frequent exacerbators of COPD

PMCID: 5909781
PMID: 29713155
DOI: 10.2147/COPD.S163459

[…] GeneCodis is a web-based tool for comprehensive analysis of gene annotations, encompassing GO, Panther and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, InterPro Motifs and Transcription Fa […]


Genome wide meta analysis identifies five new susceptibility loci for pancreatic cancer

Nat Commun
PMCID: 5805680
PMID: 29422604
DOI: 10.1038/s41467-018-02942-5

[…] were significant at false discovery rate (FDR) < 0.05 (data not shown) but significant tissue enrichment is shown in Supplementary Table . Additional gene set enrichment analysis was performed using GeneCodis3 ( Genes (n = 65) were located in the currently known pancreatic cancer risk loci identified in subjects of European descent (for genes located +/−100 kb from […]


ATP Binding Cassette Subfamily A Member 2 (ABCA2) Expression and Methylation are Associated with Alzheimer’s Disease

PMCID: 5733562
PMID: 29224028
DOI: 10.12659/MSM.905524
call_split See protocol

[…] lation coefficients above 0.5 (P value was less than 1E-20) were selected and overlapped with the DEGs whose P value was less than 1E-20. The final obtained genes were subjected to GO analysis in the GeneCoDis3 online database ( […]


Identification of common key genes in breast, lung and prostate cancer and exploration of their heterogeneous expression

PMCID: 5776944
PMID: 29434863
DOI: 10.3892/ol.2017.7508

[…] ize common genetic indicators/biomarkers in lung, breast and prostate cancer, and to confirm their relevance in cancer by exploring NCBI citations using TARGETgene and by functional annotations using GENECODIS and DAVID. A robust gene set involved in the three cancer types was obtained, as microarray and RNA-Seq data were analyzed in combination in the present study. The RNA-Seq analysis proposed […]


Prognostic impact of a novel gene expression profile classifier for the discrimination between metastatic and non metastatic primary colorectal cancer tumors

PMCID: 5746100
PMID: 29296198
DOI: 10.18632/oncotarget.22591
call_split See protocol

[…] enes were selected based on an absolute fold change cut-off of ≥2.0. Functional enrichment analysis of deregulated genes associated to molecular (KEGG) pathways was based on simultaneous usage of the GeneCodis [] and the DIANA-miRPath v.3 [] software.In order to identify the best combination of genes to discriminate between the GEP of metastatic (Group 1) and non-metastatic (Group 2) sCRC primary […]


Dynamic changes in eIF4F mRNA interactions revealed by global analyses of environmental stress responses

Genome Biol
PMCID: 5660459
PMID: 29078784
DOI: 10.1186/s13059-017-1338-4

[…] GO analyses of RNA gene lists from edgeR files were done using the web-based GeneCodis tools ( to assess the yeast GO Slim functional enrichments of eIF4F associated mRNAs against a reference list of 5348 common yeast ORFs [, ]. All reported P val […]


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GeneCodis institution(s)
Functional Bioinformatics Group, National Center for Biotechnology (CNB-CSIC), Madrid, Spain

GeneCodis review

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Anonymous user #24069

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a good website for GO and KEGG pathway analysis