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GeneCruiser specifications

Information


Unique identifier OMICS_00760
Name GeneCruiser
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for GeneCruiser

GeneCruiser citations

 (4)
library_books

Should We Have Blind Faith in Bioinformatics Software? Illustrations from the SNAP Web Based Tool

2015
PLoS One
PMCID: 4351168
PMID: 25742008
DOI: 10.1371/journal.pone.0118925

[…] array. It is however difficult to confirm this hypothesis as the SNAP source codes are not available for users. In addition, SNAP relies on another software developed by the Broad, Gene Cruiser (www.genecruiser.broadinstitute.org/genecruiser3/), to extract data related to SNP annotations []. Looking at the differences of Cohen’s Kappa coefficients using the HapMap 3 and 1000 Genomes references, w […]

library_books

Where in the genome are we? A cautionary tale of database use in genomics research

2013
Front Genet
PMCID: 3604632
PMID: 23519237
DOI: 10.3389/fgene.2013.00038

[…] s between databases can also introduce significant errors when translating gene IDs from one source to another. Even when using one of the several ID converters available (e.g., DAVID ID Converter or GeneCruiser), errors can be introduced when synonyms, HGNC symbols and other identifiers are inconsistently mapped or when the timelines for the database releases are not correctly matched or are out […]

call_split

Mapping of HNF4α target genes in intestinal epithelial cells

2009
PMCID: 2761415
PMID: 19761587
DOI: 10.1186/1471-230X-9-68
call_split See protocol

[…] trix) were coupled by using either accession number or gene symbols provided by the manufacturers. About 2,000 genes that could not be coupled by accession number or gene symbol were linked using the GeneCruiser software http://genecruiser.broad.mit.edu/genecruiser3/. Using these two methods, we were able to link 14,650 NimbleGen promoters from a total of 24,124 promoters to the Affymetrix probese […]

library_books

Exon level integration of proteomics and microarray data

2008
BMC Bioinformatics
PMCID: 2267708
PMID: 18298841
DOI: 10.1186/1471-2105-9-118

[…] ng ProGroup (Applied Biosystems, Warrington, UK) to generate protein level summaries. SWISS PROT identifiers, which form part of the Celera database annotation, were then mapped to probeset IDs using GeneCruiser []. […]

Citations

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GeneCruiser institution(s)
Broad Institute of MIT and Harvard, Cambridge, MA, USA

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