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GeneCruiser specifications

Information


Unique identifier OMICS_00760
Name GeneCruiser
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for GeneCruiser

GeneCruiser in publications

 (5)
PMCID: 4351168
PMID: 25742008
DOI: 10.1371/journal.pone.0118925

[…] array. it is however difficult to confirm this hypothesis as the snap source codes are not available for users. in addition, snap relies on another software developed by the broad, gene cruiser (www.genecruiser.broadinstitute.org/genecruiser3/), to extract data related to snp annotations []. looking at the differences of cohen’s kappa coefficients using the hapmap 3 and 1000 genomes references, […]

PMCID: 3427729
PMID: 22504421
DOI: 10.1038/ng.2237

[…] index snps. we identified over 70 snps with an r2 >0.4 that were within 500kb of each index snp using the snap proxy tool (http://www.broadinstitute.org/mpg/snap/) and annotated these snps using genecruiser (http://genecruiser.broadinstitute.org/genecruiser3/); none of these snps were exonic, non-synonymous coding snps., aging gene-environment susceptibility-reykjavik study: the research […]

PMCID: 2761415
PMID: 19761587
DOI: 10.1186/1471-230X-9-68

[…] were coupled by using either accession number or gene symbols provided by the manufacturers. about 2,000 genes that could not be coupled by accession number or gene symbol were linked using the genecruiser software http://genecruiser.broad.mit.edu/genecruiser3/. using these two methods, we were able to link 14,650 nimblegen promoters from a total of 24,124 promoters to the affymetrix […]

PMCID: 2907690
PMID: 19653909
DOI: 10.1186/1471-2164-10-356

[…] reaction (qrt-pcr) [,]. primers (listed in table ), were designed by using the primer3 software made available through the broad institute http://genecruiser.broadinstitute.org/science/software and obtained from mwg-biotech (high point, nc). the basic protocol followed for qrt-pcr experiments began with the isolation of total rna from 5.0 × […]

PMCID: 2267708
PMID: 18298841
DOI: 10.1186/1471-2105-9-118

[…] to search against the celera database (applied biosystems, warrington, uk). swiss prot identifiers, provided as part of the database annotation, were mapped to the array data using genecruiser []. 643 proteins were identified in this search (555 after filtering to remove low-quality data). 341 proteins were not mapped, either because they did not have an associated identifier […]


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GeneCruiser institution(s)
Broad Institute of MIT and Harvard, Cambridge, MA, USA

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