GeneCycle pipeline

GeneCycle specifications

Information


Unique identifier OMICS_13332
Name GeneCycle
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1.2
Stability Stable
Requirements R, MASS, longitudinal, fdrtool
Maintained Yes

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Maintainer


  • person_outline Miika Ahdesmaki <>

Publications for GeneCycle

GeneCycle IN pipeline

2009
PMCID: 2758837
PMID: 19758441
DOI: 10.1186/1752-0509-3-93

[…] in cyclebase.org [32]. the periodicity and dominant fourier frequency for the log10(tfa) profiles were determined with fisher's g-statistic (table 1) and the average periodogram (figure 2) using genecycle [13]. the module network (additional file 4) was computed using four cdc25 and four elu data (oliva elu 1&2 not used) with genomica [64]. gene ontology based associations were computed […]

GeneCycle institution(s)
Institute of Signal Processing, Tampere University of Technology, Tampere, Finland; Institute for Systems Biology, WA, USA; Marine Environmental Biology, University of Southern California, CA, USA; ProSanos Corporation, Harrisburg, PA, USA; Department of Statistics, University of Munich, Munich, Germany; Department of Mathematics and Statistics, University of Cyprus, Nicosia, Cyprus
GeneCycle funding source(s)
This work was supported by an Emmy Noether research grant (STR 624/1-2) from the Deutsche Forschungsgemeinschaft, Tampere Graduate School in Information Science and Engineering and the Academy of Finland, project No. 213462 (Finnish Centre of Excellence program (2006 – 2011)), and R01 GM072855 grant from NIH.

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