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Associated diseases

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GeneGrid specifications

Information


Unique identifier OMICS_24283
Name GeneGrid
Alternative name Genomatix GeneGrid
Software type Application/Script
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
License Commercial
Computer skills Medium
Stability Stable
Maintained No

Versioning


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Maintainer


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Additional information


https://www.genomatix.de/solutions/genegrid.html

Publication for GeneGrid

GeneGrid in publications

 (2)
PMCID: 5591807
PMID: 28821934
DOI: 10.1007/s00405-017-4699-0

[…] for variant calling, we applied the genome analysis tool kit []. the variant call format files containing the final single nucleotide, insertion, and deletion variants were further analyzed with the genomatix genegrid interface (genomatix gmbh, munich, germany). initially, the index patient sample was tested for known deafness-causing variations in all coding sequences and splice sites along […]

PMCID: 5362457
PMID: 28146430
DOI: 10.18632/oncotarget.14844

[…] sequenced reads and skewer (version 0.1.116) for adapter trimming. all following steps of raw reads analysis were performed with genomatix mining station (gms), genomatix genome analyzer (gga) and genomatix genegrid (genomatix software gmbh, munich, germany). the trimmed reads were aligned with gms (version 2.4.1, genomatix mapper version 3.7.6.3) onto human genome reference sequence (ncbi […]


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GeneGrid institution(s)
Belfast e-Science Centre, Computer Science, The Queen’s University of Belfast, Belfast, UK; Fusion Antibodies Ltd., Belfast, UK; Amtec Medical Ltd., Antrim, UK
GeneGrid funding source(s)
Supported by the Department of Trade and Industry (DTI) under the UK e-Science Programme.

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