GeneHunter protocols

GeneHunter specifications


Unique identifier OMICS_09397
Name GeneHunter
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for GeneHunter

GeneHunter IN pipelines

PMCID: 3535370
PMID: 23064873
DOI: 10.1007/s00439-012-1229-4

[…] were used to account for the correlation of transmitted alleles among multiple affected individuals in the same family., haplotypes of each individual based on these 15 snps were estimated using genehunter-plus (kruglyak et al. 1996) and plink (purcell et al. 2007). the haplotypes with the highest likelihood were selected. for subjects whose inferred haplotypes were different based […]

PMCID: 3223203
PMID: 22132174
DOI: 10.1371/journal.pone.0027940

[…] genescan 3.1 software (abi) for genotype assessment., families a-e and data of markers ca7, ren256f13, ca5, ca1, ca8, ren177b24, ca3 and fh2885 were used for multipoint lod score calculation with genehunter 2.1 software [48]. we assumed a genetic distance of 1 cm per mbp and the observed alleles of each marker were assumed to have equal frequencies. the calculation was based on a recessive […]

GeneHunter institution(s)
Whitehead Institute for Biomedical Research, Cambridge, UK

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