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Geneimprint specifications

Information


Unique identifier OMICS_15493
Name Geneimprint
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Randy Jirtle

Publications for Geneimprint

Geneimprint citations

 (13)
library_books

Maternal 5mCpG Imprints at the PARD6G AS1 and GCSAML Differentially Methylated Regions Are Decoupled From Parent of Origin Expression Effects in Multiple Human Tissues

2018
Front Genet
PMCID: 5838017
PMID: 29545821
DOI: 10.3389/fgene.2018.00036

[…] v/gapPhenoScanner. http://www.phenoscanner.medschl.cam.ac.uk/phenoscannere-GRASP, http://www.mypeg.info/egraspHaploReg, http://compbio.mit.edu/HaploRegPheGenI; https://www.ncbi.nlm.nih.gov/gap/phegeniGeneimprint, http://www.geneimprint.com/OMIM, http://www.omim.orgR software package, http://www.R-project.org […]

library_books

Epigenetic supersimilarity of monozygotic twin pairs

2018
Genome Biol
PMCID: 5759268
PMID: 29310692
DOI: 10.1186/s13059-017-1374-0

[…] ent from what is expected by chance; imprinted loci among these two classes are ANO1, GNAS, GRB10, NAP1L5, NLRP, and VTRNA2-1 (ESS) and DLGAP2, KCNQ1OT1, NAP1L5, NLRP2, and VTRNA2-1 (SIV) (http://www.geneimprint.com/). Gene set enrichment analysis (GSEA) using data from The Cancer Genome Atlas [] showed that, relative to negative controls, both ESS and SIV probes are more likely to be annotated to […]

library_books

CpG location and methylation level are crucial factors for the early detection of oral squamous cell carcinoma in brushing samples using bisulfite sequencing of a 13 gene panel

2017
Clin Epigenetics
PMCID: 5558660
PMID: 28814981
DOI: 10.1186/s13148-017-0386-7

[…] best option, maintaining BISMA as a supporting tool for confirmation. NTM, LRRTM1, MIR296, H19, and DNMT1 are known to be imprinted genes and are included in the imprinting gene database (http://www.geneimprint.com). However, no normal healthy donors, contralateral normal mucosa or DNA from whole blood of a pool of healthy female donors was either hemimethylated or fully methylated in DNMT1, LRRT […]

library_books

Detailed Characterization of Human Induced Pluripotent Stem Cells Manufactured for Therapeutic Applications

2016
PMCID: 4919381
PMID: 27283945
DOI: 10.1007/s12015-016-9662-8

[…] ion event and no enrichment was found with the duplication event (Table ).To check the status of the imprinted genes, the list of published imprinted genes were obtained from the database (http://www.geneimprint.com). Genes with the status of imprinted and predicted were considered for the analysis. In LiPSC-ER2.2 cell line, a total of 148 of 203 genes were identified with an adequate depth of cov […]

library_books

A uniform survey of allele specific binding and expression over 1000 Genomes Project individuals

2016
Nat Commun
PMCID: 4837449
PMID: 27089393
DOI: 10.1038/ncomms11101

[…] DE database; immunoglobulin, T-cell receptor and MHC gene lists are from IMGT database. Imprinted genes are merged from the Catalog of Parent-of-origin Effects (http://igc.otago.ac.nz/home.html), the GeneImprint website (http://www.geneimprint.com/) and also Lo et al.. We performed enrichment analyses on a number of enhancer lists, which are derived using the ChromHMM and Segway algorithms, and da […]

library_books

DNA methylation differences in monozygotic twin pairs discordant for schizophrenia identifies psychosis related genes and networks

2015
BMC Med Genomics
PMCID: 4494167
PMID: 25943100
DOI: 10.1186/s12920-015-0093-1

[…] n the enriched genes. Also, pathway analysis and gene ontology analysis were conducted using Partek Pathways (Fishers Exact Test) and Enrichr []. Shared genes were annotated with imprinting data from GeneImprint (http://www.geneimprint.com) and The Catalogue of Parent of Origin Effects (http://igc.otago.ac.nz/home.html). […]

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Geneimprint institution(s)
Department of Biological Sciences, North Carolina State University, Raleigh, NC, USA

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