Geneious Microsatellite Plugin specifications

Information


Unique identifier OMICS_00104
Name Geneious Microsatellite Plugin
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements
Geneious
Maintained Yes

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Documentation


Geneious Microsatellite Plugin in publications

 (3)
PMCID: 5431814
PMID: 28496148
DOI: 10.1038/s41598-017-01929-4

[…] using 12 microsatellite markers (cbssr1, cbssr2, cbssr3, cbssr6, cbssr20, cbssr21, cbssr22, cbssr23, cbssr24, cbssr25, cbssr26, and cbssr27) as described previously. alleles were scored using the geneious microsatellite plugin v. 1.4. to reduce genotyping error, genotyping was replicated for 25% of the samples, including all isolates showing null or rare alleles, and error rates (el) […]

PMCID: 5414274
PMID: 28484637
DOI: 10.1098/rsos.170105

[…] inc. (seoul, korea) or the australian genome research foundation (melbourne, australia) on a 3730xl sequencer (applied biosystems), with a gs500liz size standard. peaks were scored using the geneious microsatellite plugin version 1.0.0 (biomatters ltd, auckland, new zealand)., we used genalex v. 6.41 [] to calculate genetic diversity parameters for populations, regions and the entire […]

PMCID: 4373762
PMID: 25806968
DOI: 10.1371/journal.pone.0120745

[…] assemble microsatellite files and to score and bin alleles for each of the incipient colonies. the microsatellites were scored using the 3rd order least squares sizing method as recommended in the geneious microsatellite plugin manual (biomatters ltd.). allele peaks with a y-scale value of ≥8,000 were used in scoring alleles for all colonies; with the exception of some individuals […]


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