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Geneious Microsatellite Plugin specifications


Unique identifier OMICS_00104
Name Geneious Microsatellite Plugin
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes


No version available


Geneious Microsatellite Plugin citations


Genetic structure of Cercospora beticola populations on Beta vulgaris in New York and Hawaii

Sci Rep
PMCID: 5431814
PMID: 28496148
DOI: 10.1038/s41598-017-01929-4

[…] rk) using 12 microsatellite markers (CbSSR1, CbSSR2, CbSSR3, CbSSR6, CbSSR20, CbSSR21, CbSSR22, CbSSR23, CbSSR24, CbSSR25, CbSSR26, and CbSSR27) as described previously. Alleles were scored using the Geneious Microsatellite Plugin v. 1.4. To reduce genotyping error, genotyping was replicated for 25% of the samples, including all isolates showing null or rare alleles, and error rates (el) were quan […]


Chance long distance or human mediated dispersal? How Acacia s.l. farnesiana attained its pan tropical distribution

R Soc Open Sci
PMCID: 5414274
PMID: 28484637
DOI: 10.1098/rsos.170105

[…] Macrogen Inc. (Seoul, Korea) or the Australian Genome Research Foundation (Melbourne, Australia) on a 3730XL sequencer (Applied Biosystems), with a GS500LIZ size standard. Peaks were scored using the Geneious microsatellite plugin version 1.0.0 (Biomatters Ltd, Auckland, New Zealand). […]


The history of introduction of the African baobab (Adansonia digitata, Malvaceae: Bombacoideae) in the Indian subcontinent

R Soc Open Sci
PMCID: 4593694
PMID: 26473060
DOI: 10.1098/rsos.150370

[…] to equal concentrations and combined, then separated on an ABI 3730XL sequencer with a GS500LIZ size standard (Applied Biosystems) at Macrogen Inc. (Seoul, Korea). Allele sizes were scored using the Geneious microsatellite plugin v. 1.0.0 (Biomatters Ltd). […]


Hybridization of Two Major Termite Invaders as a Consequence of Human Activity

PLoS One
PMCID: 4373762
PMID: 25806968
DOI: 10.1371/journal.pone.0120745

[…] to assemble microsatellite files and to score and bin alleles for each of the incipient colonies. The microsatellites were scored using the 3rd order least squares sizing method as recommended in the Geneious Microsatellite Plugin Manual (Biomatters Ltd.). Allele peaks with a Y-scale value of ≥8,000 were used in scoring alleles for all colonies; with the exception of some individuals where the ini […]


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