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Protocols

GeneLoc specifications

Information


Unique identifier OMICS_22312
Name GeneLoc
Alternative name Genome Locator
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 4.5
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Additional information


https://genecards.weizmann.ac.il/geneloc/about_new.shtml

GeneLoc citations

 (5)
library_books

Rational confederation of genes and diseases: NGS interpretation via GeneCards, MalaCards and VarElect

2017
Biomed Eng Online
PMCID: 5568599
PMID: 28830434
DOI: 10.1186/s12938-017-0359-2

[…] GeneCards encompasses a comprehensive collection of 101,976 ncRNA entries, integrated from 15 different data sources []. An integration algorithm is used, based on mapping to genomic coordinates via GeneLoc, another GeneCards suite tool []. VarElect can make use of this wealth of information to assist in identifying the involvement of ncRNA gene variations in disease.Addressing transcription regu […]

library_books

Expedited batch processing and analysis of transposon insertions

2011
BMC Res Notes
PMCID: 3222620
PMID: 22054356
DOI: 10.1186/1756-0500-4-482

[…] designed with each of the common major sub-functions (hit processing, sequence extraction, and hit-object methods) contained within their own sub-modules. This program is composed of process_hits.pl, Geneloc.pm, Gene_process.pm, and Gene_extract.pm as well as several optional simple scripts designed to assist with pre-formatting and other data management issues. Process_hits.pl is the user interfa […]

call_split

Incorporating prior knowledge to facilitate discoveries in a genome wide association study on age related macular degeneration

2010
BMC Res Notes
PMCID: 2843735
PMID: 20181037
DOI: 10.1186/1756-0500-3-26
call_split See protocol

[…] with LOD score >2.0) based on previous linkage studies [-]. We obtained the physical position of each D-number marker (listed in Table ) from the Gene Location website http://genecards.weizmann.ac.il/geneloc/index.shtml. Then SNPs within 500 kb from each D-number marker were prioritized.Moreover, several genes have had at least one positive association finding [,]. These genes with SNPs genotyped […]

library_books

GIFtS: annotation landscape analysis with GeneCards

2009
BMC Bioinformatics
PMCID: 2774327
PMID: 19852797
DOI: 10.1186/1471-2105-10-348

[…] is to incorporate overlapping sources, and perform integration of data for different annotation fields. Considerable attention is also directed to conflicts among sources, one clear example being the GeneLoc [] member of the GeneCards suite, which handles conflicts in genomic coordinates from Ensembl [] and NCBI []. The overlap problem is particularly applicable for data extracted from genome-wide […]

library_books

Mapping data elements to terminological resources for integrating biomedical data sources

2006
BMC Bioinformatics
PMCID: 1764450
PMID: 17134479
DOI: 10.1186/1471-2105-7-S3-S6

[…] cessible biomedical sources, selected to be representative of the different kinds of resources found in the biomedical domain. Some of them contain information about genes: GeneCards [], Entrez Gene, Geneloc [], Genew (the HGNC [] database), and HGMD [], others about proteins: Swiss-Prot [], PDB, HPRD, Interpro [] or diseases: OMIM []. Our application is not targeted to a particular model organism […]

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