GeneMark pipeline

GeneMark specifications


Unique identifier OMICS_01485
Name GeneMark
Alternative name GeneMark-ES
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A sequence.
Input format FASTA
Output format A protein sequence or a gene nucleotide sequence.
Operating system Unix/Linux
Computer skills Basic
Version 2.5
Stability Stable
Maintained Yes


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  • person_outline Mark Borodovsky <>
  • person_outline Alex Lomsadze <>

Publication for GeneMark

GeneMark IN pipeline

PMCID: 5844296
PMID: 29311113
DOI: 10.1534/g3.117.300316

[…] and a. aegypti, respectively. all genomes analyzed in this study, and in newly sequenced and reference ones, were annotated using the following procedure. first, gene calling was performed using genemark-es suite version 4.32 (ter-hovhannisyan et al. 2008) with the parameter –min_contig set to 10,000 and using the –fungus option. then, clusters of orthologous groups (cogs) (tatusov et al. […]

GeneMark institution(s)
School of Biology, Georgia Institute of Technology, Atlanta, GA, USA; Department of Biomedical Engineering, Georgia Institute of Technology, Atlanta, GA, USA

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