GenePainter statistics

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GenePainter specifications

Information


Unique identifier OMICS_07043
Name GenePainter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Martin Kollmar <>

Information


Unique identifier OMICS_07043
Name GenePainter
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Martin Kollmar <>

Publications for GenePainter

GenePainter in publications

 (3)
PMCID: 5583752
PMID: 28870165
DOI: 10.1186/s12862-017-1056-2

[…] conservation even in genes from species with very low intron densities. myosin gene structures were reconstructed with webscipio []. the regions coding for the motor domains were than compared with genepainter [], which resolves conserved intron positions at nucleotide resolution. to obtain class-specific intron position patterns we wanted to exclude that the intron patterns are dominated […]

PMCID: 5648526
PMID: 28876222
DOI: 10.7554/eLife.23435.121

[…] as we cloned the whole genes from genomic dna (platynereis dumerilii c-opsin and leptochiton asellus opsin). the obtained gene structures were than mapped onto the un-curated sequence alignment using genepainter () in order to identify homologous intron positions and to analyze opsin gene structure conservation. to evaluate the stability of the observed patterns against alignment artifacts, gene s […]

PMCID: 4948059
PMID: 26829753
DOI: 10.1038/ng.3495

[…] heuristic search settings., introns that were present in two or more species were identified from gene structures and full gene nucleotide alignments of 208 single-copy orthologs using scippio and genepainter. the output from genepainter was parsed into dollop (phylip package; felsenstein, j.) to infer intron gain and loss on every node of the species tree using maximum parsimony., […]


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GenePainter institution(s)
Group Systems Biology of Motor Proteins, Department of NMR-based Structural Biology, Max-Planck-Institute for Biophysical Chemistry, Göttingen, Germany

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