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GenePainter specifications

Information


Unique identifier OMICS_07043
Name GenePainter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Martin Kollmar

Information


Unique identifier OMICS_07043
Name GenePainter
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Martin Kollmar

Publications for GenePainter

GenePainter citations

 (4)
library_books

Myosin repertoire expansion coincides with eukaryotic diversification in the Mesoproterozoic era

2017
BMC Evol Biol
PMCID: 5583752
PMID: 28870165
DOI: 10.1186/s12862-017-1056-2

[…] Intron conservation in the myosin motor domains was analyzed with GenePainter v.2 [], applied separately for each myosin class. GenePainter maps gene structures onto protein sequences from multiple sequence alignments. Introns separating codons at different nucleoti […]

library_books

Co expression of xenopsin and rhabdomeric opsin in photoreceptors bearing microvilli and cilia

2017
eLife
PMCID: 5648526
PMID: 28876222
DOI: 10.7554/eLife.23435.121

[…] as we cloned the whole genes from genomic DNA (Platynereis dumerilii c-opsin and Leptochiton asellus opsin). The obtained gene structures were than mapped onto the un-curated sequence alignment using Genepainter () in order to identify homologous intron positions and to analyze opsin gene structure conservation. To evaluate the stability of the observed patterns against alignment artifacts, gene s […]

library_books

PIECE 2.0: an update for the plant gene structure comparison and evolution database

2016
Nucleic Acids Res
PMCID: 5210635
PMID: 27742820
DOI: 10.1093/nar/gkw935

[…] logous genes offers an important method for biologists to analyze gene evolution. A number of web server applications for gene structure analysis have been developed, such as FancyGene (), GSDraw (), GenePainter () and GSDS (). Among them, GSDraw is the one that can use sequence data (genomic, CDS and transcript sequences) to extract the gene structure, protein motif, and phylogenetic information, […]

library_books

The Genomic Basis of Parasitism in the Strongyloides Clade of Nematodes

2016
Nat Genet
PMCID: 4948059
PMID: 26829753
DOI: 10.1038/ng.3495

[…] Introns that were present in two or more species were identified from gene structures and full gene nucleotide alignments of 208 single-copy orthologs using ScipPio and GenePainter. The output from GenePainter was parsed into DOLLOP (PHYLIP package; Felsenstein, J.) to infer intron gain and loss on every node of the species tree using maximum parsimony.Whole-assembly […]

Citations

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GenePainter institution(s)
Group Systems Biology of Motor Proteins, Department of NMR-based Structural Biology, Max-Planck-Institute for Biophysical Chemistry, Göttingen, Germany

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