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Protocols

GenePath specifications

Information


Unique identifier OMICS_25686
Name GenePath
Interface Web user interface
Restrictions to use None
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Blaž Zupan

Publications for GenePath

GenePath citations

 (51)
library_books

GWAS of epigenetic aging rates in blood reveals a critical role for TERT

2018
Nat Commun
PMCID: 5786029
PMID: 29374233
DOI: 10.1038/s41467-017-02697-5

[…] ut the masnucript are: 1000 genome project, http://www.1000genomes.org/, DNAm age, http://labs.genetics.ucla.edu/horvath/htdocs/dnamage/, ENGAGE, https://downloads.lcbru.le.ac.uk/, EIGENSTRAT, http://genepath.med.harvard.edu/~reich/Software.htm, GTEx, http://www.gtexportal.org/home/documentationPage#AboutGTEx, GIANT, https://www.broadinstitute.org/collaboration/giant/index.php/Main_Page, HaploReg, […]

library_books

Milk Intake at Midlife and Cognitive Decline over 20 Years. The Atherosclerosis Risk in Communities (ARIC) Study

2017
PMCID: 5691750
PMID: 29039795
DOI: 10.3390/nu9101134

[…] he imputation from the reference panel. The final sample with genetic data used for imputation was 9713 Whites and 2871 Blacks. Principal components were generated using the Eigensoft package (http://genepath.med.harvard.edu/~reich/Software.htm), and ancestry outliers were removed. The final sample with genetic data used for imputation was 9713 Whites and 2871 Blacks. […]

library_books

Genetic architecture of epigenetic and neuronal ageing rates in human brain regions

2017
Nat Commun
PMCID: 5454371
PMID: 28516910
DOI: 10.1038/ncomms15353

[…] 1000 Genome project, http://www.1000genomes.org/BRAINEAC, http://www.braineac.org/DNAm age, http://labs.genetics.ucla.edu/horvath/htdocs/dnamage/EIGENSTRAT, http://genepath.med.harvard.edu/~reich/Software.htmGTEx, http://www.gtexportal.org/home/documentationPage#AboutGTExGIANT, https://www.broadinstitute.org/collaboration/giant/index.php/Main_PageHRS, http://hrs […]

library_books

Population genomics identifies the origin and signatures of selection of South Korean weedy rice

2016
Plant Biotechnol J
PMCID: 5316921
PMID: 27589078
DOI: 10.1111/pbi.12630

[…] , ), to generate the population structure. For positive selection, we used VCFtools (Danecek et al., ) for nucleotide diversity and F ST analysis. We performed XP‐CLR using the XP‐CLR program (http://genepath.med.harvard.edu/~reich). XP‐EHH and iHS were performed by using selscan software (Szpiech and Hernandez, ). […]

library_books

An Outbreak of Infections Caused by a Klebsiella pneumoniae ST11 Clone Coproducing Klebsiella pneumoniae Carbapenemase 2 and RmtB in a Chinese Teaching Hospital

2016
PMCID: 5009584
PMID: 27569227
DOI: 10.4103/0366-6999.189049

[…] The GenePath System from Bio-Rad Laboratories (Hercules, CA, USA) was used for PFGE analysis, and the genomic DNA was prepared according to the manufacturer's instructions. In brief, the genomic DNA was p […]

call_split

Longitudinal relationships between glycemic status and body mass index in a multiethnic study: evidence from observational and genetic epidemiology

2016
Sci Rep
PMCID: 4969745
PMID: 27480816
DOI: 10.1038/srep30744
call_split See protocol

[…] f these 17394 individuals, 9297 have been prospectively followed for a median of 3.3 years (). Self-reported ethnicity has been validated in the 17394 individuals using the eigensoft software (http://genepath.med.harvard.edu/~reich/Software.htm). The EpiDREAM study was approved by local ethics committees. All experimental protocols were approved by McMaster University and were performed in accorda […]

Citations

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GenePath institution(s)
Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA
GenePath funding source(s)
Supported in part by a grant from the Slovene Ministry of Education, Science and Sports and by a grant from the National Institute of Child Health and Human Development, P01 HD39691.

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