Genephony statistics

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Associated diseases

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Genephony specifications


Unique identifier OMICS_17714
Name Genephony
Interface Web user interface
Restrictions to use None
Programming languages Java, Other
Computer skills Basic
Stability No
Maintained No

Publication for Genephony

Genephony in publications

PMCID: 3435396
PMID: 22970175
DOI: 10.1371/journal.pone.0044162

[…] the functional roles of the genotyped and validated snps related to the pathways under investigation. all procedures related to snp set creation, manipulation and filtering were performed using genephony, a user-friendly web-based browser for large-scale genomic datasets manipulation and for knowledge-based discovery tasks ., finally, to test if the association detected for ra-associated […]

PMCID: 3262222
PMID: 22303384
DOI: 10.3389/fgene.2011.00090

[…] errors. after this annotation, approximately 1.5% of the snps from the original set that were not found in dbsnp or 1000 genomes were labeled as “novel” (figure a). these steps were conducted with genephony, an online tool for the manipulation of large datasets of genomic information (nuzzo and riva, )., we identified 15 additional whole genome sequences for comparison. the samples […]

PMCID: 2762070
PMID: 19828081
DOI: 10.1186/1471-2105-10-S12-S5

[…] client interface by which the phenotype miner can access external repositories of genomic knowledge that support the web services protocols. in particular, we implemented methods to interact with genephony, an online tool for genomic dataset annotation []. in the current prototype, we exploit the functionalities provided by genephony to automatically find snps related to a mendelian phenotype […]

PMCID: 2646249
PMID: 19208195
DOI: 10.1186/1471-2105-10-S2-S7

[…] snps (p < 10-4, corrected for permutation tests). p-values given by genotypic association tests confirmed the same results as the allelic association tests., snp annotation was performed using genephony, an online tool for genomic dataset annotation []: a snp is annotated to a gene if it is located in a 10 kb region around the coding sequence. selecting only those genes represented […]

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Genephony institution(s)
Centre for Tissue Engineering, University of Pavia, Pavia, Italy; Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL, USA; University of Florida Genetics Institute, University of Florida, Gainesville, FL, USA
Genephony funding source(s)
This project was supported by NIH grant R01 HL87681-01, "Genome-Wide Association Studies in Sickle Cell Anemia and in Centenarians", by NIH grant 5U54LM008748- 02 (National Centers for Biomedical Computing), and by the "Bioinformatics for Tissue Engineering: Creation of an International Research Group" project, funded by Fondazione Cariplo.

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