GenePix Pro statistics

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Citations per year

Number of citations per year for the bioinformatics software tool GenePix Pro
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Tool usage distribution map

This map represents all the scientific publications referring to GenePix Pro per scientific context
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Protocols

GenePix Pro specifications

Information


Unique identifier OMICS_00840
Name GenePix Pro
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline GenePix Pro Team

GenePix Pro citations

 (605)
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Probiotic Lactobacillus fermentum strain JDFM216 stimulates the longevity and immune response of Caenorhabditis elegans through a nuclear hormone receptor

2018
Sci Rep
PMCID: 5945636
PMID: 29748542
DOI: 10.1038/s41598-018-25333-8
call_split See protocol

[…] rays were hybridized at 65 °C for 17 h using Agilent’s Hybridization Oven. The hybridized microarrays were washed according to the manufacturer’s protocol (Agilent Technology) and were analyzed using GenePix Pro 6.0 (Axon Instruments, Foster City, CA). The average fluorescence intensity for each spot was calculated, and local background was subtracted. All data normalization and selection of fold- […]

library_books

The LuxS/AI 2 Quorum Sensing System of Streptococcus pneumoniae Is Required to Cause Disease, and to Regulate Virulence and Metabolism Related Genes in a Rat Model of Middle Ear Infection

2018
PMCID: 5945837
PMID: 29780750
DOI: 10.3389/fcimb.2018.00138

[…] ied by centrifugation at 650 rpm for 5 min. The hybridization image on the slide was scanned using 4000B apparatus (Axon Instruments, Union City, CA, USA).The hybridization images were analyzed using GenePix Pro 3.0 software (Axon Instruments, Union City, CA, USA) to obtain the gene expression ratios of the D39 wild-type and D39ΔluxS biofilms. The microarray data were analyzed using Genowiz 4.0™ ( […]

library_books

Comparative analysis of human sperm glycocalyx from different freezability ejaculates by lectin microarray and identification of ABA as sperm freezability biomarker

2018
PMCID: 5925848
PMID: 29719495
DOI: 10.1186/s12014-018-9195-z

[…] The binding signals of the sperm with lectin microarray were extracted by GenePix pro 6.0. The signal intensity to the local background noise ratio (SNR) was defined as F532 Mean/B532 Mean, and all the spots’ SNRs of lectin microarray were calculated and normalized. Because […]

library_books

Integrated analysis of microRNA and mRNA expression profiles in rats with selenium deficiency and identification of associated miRNA mRNA network

2018
Sci Rep
PMCID: 5920094
PMID: 29700405
DOI: 10.1038/s41598-018-24826-w

[…] Oligo Array (4 × 44 K, Agilent Technologies). Microarray was then washed by Wash buffer kit (Exiqon) and scanned by the Axon GenePix 4000B microarray scanner (Axon Instruments, Foster City, CA). the GenePix Pro 6.0 software (Axon Instruments) was utilized to extract the data. […]

library_books

miR 148b 3p functions as a tumor suppressor in GISTs by directly targeting KIT

2018
PMCID: 5902930
PMID: 29661252
DOI: 10.1186/s12964-018-0228-z

[…] ed out on a μParaflo microfluidic chip (Atactic Technologies, Houston, TX, USA). Fluorescent signals were scanned by a microarray scanner (GenePix 4000B, Molecular Device, USA) and analyzed using the GenePix Pro 6.0 software. The Locally Weighted Regression by LOWESS filter was used to normalize the data. The P-value was corrected by the false discovery rate (FDR). Only dysregulated miRNAs that fu […]

library_books

Baseline antibody profiles predict toxicity in melanoma patients treated with immune checkpoint inhibitors

2018
J Transl Med
PMCID: 5880088
PMID: 29606147
DOI: 10.1186/s12967-018-1452-4

[…] Slides were scanned using a GenePix 4000B instrument (Molecular Dynamics, Sunnyvale, CA) and GenePix Pro (v7.2.22) software was used to measure the signal intensities for IgG binding to array features as well as any background signal present. Before pre-processing, each array was manually ins […]


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GenePix Pro institution(s)
Molecular Devices, LLC., San Jose, CA, USA

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