GenePix Pro protocols

GenePix Pro specifications

Information


Unique identifier OMICS_00840
Name GenePix Pro
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline GenePix Pro Team <>

GenePix Pro IN pipelines

 (7)
2015
PMCID: 4312595
PMID: 25603772
DOI: 10.1186/s12870-014-0378-0

[…] 5 m in 5xssc, 0.1%sds and 0.1 mg/ml bsa. microarray hybridizations and washings were done in manual chambers at 42°c, according to forment et al. [50]. scanning and image analysis was performed using genepix pro 6.0 software (molecular devices)., for wild type vs. wild type + glyphosate, two biological replicates were done. expression ratios in both microarrays were averaged and considered for fur […]

2013
PMCID: 3855414
PMID: 24340001
DOI: 10.1371/journal.pone.0082164

[…] (life technologies) for 1 hour. slides were dried with an aspirator and scanned using a genepix 4000b microarray scanner (molecular devices, sunnyvale, ca, usa)., scanned slides were analyzed using genepix pro version 6.0 software (molecular devices). the median fluorescence intensity of each feature minus background (mfi-b) was determined and averaged to obtain a fluorescence value […]

2012
PMCID: 3382141
PMID: 22745818
DOI: 10.1371/journal.pone.0039718

[…] one of the cy5-labelled experimental rna samples and cy3-labelled gdna (universal reference). the resulting microarray slides were scanned using the genepix-4000b (axon) and images analysed with genepix pro 6.0 (axon)., linear models for microarray data [45] were used to produce differentially expressed gene lists. background-subtracted spot intensities from hybridized cy5 labels (signal […]

2012
PMCID: 3392818
PMID: 22300536
DOI: 10.1186/ar3707

[…] immunoresearch). arrays were scanned using a genepix 4000b scanner, always using the same pmt power for a given set of arrays. the net mean pixel intensities of each feature were determined using genepix pro 6.1 software (molecular devices, sunnyvale, ca). epigenome peptide microarrays were probed with mouse serum as described [36]. all microarray data have been deposited in the gene […]

2011
PMCID: 3195753
PMID: 21952044
DOI: 10.1186/1746-4811-7-29

[…] each for 5 cycles (20 s flow, 40 s hold). slides were then removed, immersed in 0.05 × ssc, drained and scanned on a scanarray express scanner (perkinelmer)., for quantitative analysis filtering, genepix pro v. 6.1 (axon instruments) was used. spots with more than 10% pixels with signal saturation in both channels, as well as visually bad or contaminated spots, were flagged out. further data […]

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