Genepop specifications

Information


Unique identifier OMICS_17393
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License CeCILL version 2.1, GNU General Public License version 3.0
Computer skills Advanced
Version 4.6
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline François Rousset <>

Additional information


http://genepop.curtin.edu.au/

Genepop article

Genepop citations

 (24)
2018
PMCID: 5896914

[…] disequilibrium among all loci pairs in all sampling sites and tests for significant deviations from the hardy-weinberg equilibrium (hwe) at each locus in each sampling site were performed using genepop [41]. possible genotyping errors (e.g., null alleles and allele dropout) were checked using micro-checker v2.2.3 [42]., to determine the genetic diversity levels in the population, allele […]

2017
PMCID: 5651473

[…] extension at 72 °c. the pcr products were separated on 2% agarose gel electrophoresis and analyzed., allele frequency as well as the observed and expect-ed heterozygosity was determined using the genepop software (22). the haplotype frequency was estimated using arlequin (23) and fbat software (24) on the data obtained from unrelated individuals and family trios, respectively. the program […]

2017
PMCID: 5651473

[…] 212 unrelated healthy individuals and 13 family trios in the iranian population using tetra-primer arms pcr technique. the allele frequency and population status of the alleles were estimated using genepop, fbat, powermarker and arlequin software., the results indicated that in the case of rs4148326 marker, allele frequency for t and c allele was 66.04% and 33.96%, respectively. for rs4124874 […]

2017
PMCID: 5485074

[…] appropriate unbiased estimator of divergence (balloux & lugon‐moulin 2002). potential association between f st and geographical distance was explored by a mantel test of matrix correlation using genepop 4.0.10 (rousset 2008). an additional measure of differentiation (jost's d est) was calculated in genalex 6.501 (peakall & smouse 2012) using all samples. population substructuring […]

2017
PMCID: 5383466

[…] 2013). we called snps using a maximum‐likelihood statistical model implemented in ref_map.pl requiring a minimum of two identical reads to create a stack. we generated input files (structure and genepop format) for downstream analyses with the program populations. loci included in the final dataset had at least 10× depth of sequencing and were present in at least 90% of the individuals […]

Genepop institution(s)
Institut des Sciences de l’Evolution (UM2-CNRS), Université Montpellier 2, Montpellier, France

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