genePredToBed statistics

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genePredToBed specifications


Unique identifier OMICS_17270
Name genePredToBed
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format GENEPRED
Output format BED
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

genePredToBed citation


A high resolution mRNA expression time course of embryonic development in zebrafish

PMCID: 5690287
PMID: 29144233
DOI: 10.7554/eLife.30860.051

[…] NAs as any spliced transcript overlapping at least one of these loci. Ensembl and Havana (v87) annotation was selected as the baseline for novel pri-miRNA prediction. UCSC utilities gtfToGenePred and genePredToBed were used to convert from GTF to BED format. Pri-miRNAs were identified by removing single exon transcripts from the merged assembly and Ensembl annotations and comparing the remainder t […]

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