genePredToBed statistics

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Tool usage distribution map

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Associated diseases

Associated diseases

genePredToBed specifications

Information


Unique identifier OMICS_17270
Name genePredToBed
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format GENEPRED
Output format BED
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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genePredToBed in publication

PMCID: 5690287
PMID: 29144233
DOI: 10.7554/eLife.30860.051

[…] as any spliced transcript overlapping at least one of these loci. ensembl and havana (v87) annotation was selected as the baseline for novel pri-mirna prediction. ucsc utilities gtftogenepred and genepredtobed were used to convert from gtf to bed format. pri-mirnas were identified by removing single exon transcripts from the merged assembly and ensembl annotations and comparing the remainder […]


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