Combines connectivity and expression data to produce a robust summary of an experiment. GeneRank is based on the PageRank algorithm and increase its capabilities to rank genes in microarray experiments. It is able to highlight the transcription factor. This tool uses graph or an undirected graph where a node represents a gene and the edges can be defined by some other "previous knowledge" as input.
Bioinformatics Research Centre, University of Glasgow, Glasgow, UK; Department of Mathematics, University of Strathclyde, Glasgow, UK; Institute of Biomedical and Life Sciences, Glasgow, UK
GeneRank funding source(s)
Supported by a Synergy scholarship, a jointly supervised studentship between the universities of Strathclyde and Glasgow; by a BBSRC grant (17/G17989); by a Fellowship from the Royal Society of Edinburgh/ Scottish Executive Education and Lifelong Learning Department and by the EPSRC grant GR/562383/01.