geneRecommender statistics

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Citations per year

Number of citations per year for the bioinformatics software tool geneRecommender

Tool usage distribution map

This map represents all the scientific publications referring to geneRecommender per scientific context
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Associated diseases


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geneRecommender specifications


Unique identifier OMICS_19635
Name geneRecommender
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.52.0
Stability Stable
methods, stats, Biobase, R(>=1.8.0), Biobase(>=1.4.22)
Maintained Yes




No version available



  • person_outline Art Owen
  • person_outline Greg Hather

Publication for geneRecommender

geneRecommender citation


A search engine to identify pathway genes from expression data on multiple organisms

BMC Syst Biol
PMCID: 1878502
PMID: 17477880
DOI: 10.1186/1752-0509-1-20

[…] in human, orthologous protein sequences in fly are identified by looking for fly proteins associated with the given human proteins in the BTP table that translates human proteins to fly proteins. The GeneRecommender is used to rank all of the genes in a single organism's genome in decreasing order of expression similarity to the query set. The expression similarity is computed over a set of inform […]

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geneRecommender institution(s)
Department of Statistics, Stanford University, Stanford, CA, USA; Stanford Medical Informatics, MSOB X-215, Stanford, CA, USA; Departments of Developmental Biology and Genetics, Stanford University School of Medicine, Stanford, CA, USA
geneRecommender funding source(s)
Supported by grants from NIH GMS, NCRR and by the NSF (DMS-0072445).

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