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geneRecommender specifications


Unique identifier OMICS_19635
Name geneRecommender
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.52.0
Stability Stable
methods, stats, Biobase, R(>=1.8.0), Biobase(>=1.4.22)
Maintained Yes




No version available



  • person_outline Art Owen <>
  • person_outline Greg Hather <>

Publication for geneRecommender

geneRecommender citation


A search engine to identify pathway genes from expression data on multiple organisms

PMCID: 1878502
PMID: 17477880
DOI: 10.1186/1752-0509-1-20

[…] this tendency may produce a more accurate result. to test this hypothesis, we developed a search engine, the multiple-species gene recommender (msgr), which combines search results obtained by the generecommender [] run on multiple organisms. the generecommender is a search engine that identifies genes highly coregulated with the query genes using data from a single organism. each microarray […]

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geneRecommender institution(s)
Department of Statistics, Stanford University, Stanford, CA, USA; Stanford Medical Informatics, MSOB X-215, Stanford, CA, USA; Departments of Developmental Biology and Genetics, Stanford University School of Medicine, Stanford, CA, USA
geneRecommender funding source(s)
Supported by grants from NIH GMS, NCRR and by the NSF (DMS-0072445).

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