0 user reviews
0 user reviews
Already have an account? Sign in to review this tool.
No review has been posted.
No open topic.
- Software type:
- Restrictions to use:
- Output data:
- The output is the most regulated metabolic subnetwork of size controlled by false discovery rate parameters. The subnetworks are then visualized online and also can be downloaded in Cytoscape format for subsequent processing.
- Web user interface
- Input data:
- The analysis takes as input differential expression (DE) tables for genes and/or metabolites between two conditions of interest containing all expressed genes (whether they are differentially expressed or not).
- Computer skills:
- Source code URL:
- Alexey Sergushichev <asergushichev at path.wustl.edu>
Already have an account? Sign in to set your contributions.
- (Sergushichev AA et al., 2016) GAM: a web-service for integrated transcriptional and metabolic network analysis. Nucleic Acids Res. PMID: 27098040 DOI: 10.1093/nar/gkw266
Computer Technologies Department, ITMO University, Saint Petersburg, Russia; Department of Pathology & Immunology, Washington University in St. Louis, St. Louis, MO, USA; Agios Pharmaceuticals, Cambridge, MA, USA; Goodman Cancer Research Centre, McGill University, Montreal, Canada; Department of Physiology, McGill University, Montreal, QC, Canada; General Metabolics, Winchester, MA, USA; Department of Immunometabolism, Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
Supported by Government of Russian Federation [074-U01]