GeneScissors protocols

View GeneScissors computational protocol

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GeneScissors specifications

Information


Unique identifier OMICS_26372
Name GeneScissors
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Wei Wang <>

Publication for GeneScissors

GeneScissors in pipeline

2013
PMCID: 4053832
PMID: 23998801
DOI: 10.1186/gb-2013-14-8-310

[…] (more than 5%) in read-data associated with poorly expressed isoforms. wei wang (university of california, los angeles, usa) presented a post-assembler tool using support vector machines, genescissors, to correct misaligned fragments in rna-seq caused by sequence repeats and errors (more than 88% precision and recall; 54% fewer pseudogenes than from the tophat/cufflinks pipeline). bo […]


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GeneScissors in publication

PMCID: 4380817
PMID: 25730764
DOI: 10.1038/ng.3222

[…] allele-specific reads counts, and factor in x inactivation skewing, can be found at www.bioconductor.org (“rxseq”). to detect and correct spurious rnaseq read misalignment (i.e. pseudogenes) access genescissors (http://csbio.unc.edu/genescissors/). knockout mouse phenotypes were acquired from: www.informatics.jax.org/phenotypes.shtml. orthologous genes between human and mice were identified […]


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GeneScissors institution(s)
Department of Computer Science, University of North Carolina at Chapel Hill, NC, USA; Department of Electrical Engineering and Computer Science, Case Western Reserve University, Cleveland, OH, USA; Department of Genetics, University of North Carolina at Chapel Hill, NC, USA; Department of Computer Science, University of California, Los Angeles, CA, USA
GeneScissors funding source(s)
Supported by grants: NIMH/NHGRI P50 MH090338, NIH GM P50 GM076468, NSF IIS-1313606, NSF IIS-0812464.

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