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- Software type:
- Restrictions to use:
- Input format:
- Programming languages:
- Command line interface
- Input data:
- Coding sequences (CDS) to protein sequences, a species tree, gene feature information in JSON format
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Transeq, Filter by FASTA IDs, BLAST, BLAST parser, hcluster_sg, hcluster_sg parser, T-Coffee, Tranalign, TreeBeST, Gene Alignment and Family Aggregator (GAFA), cut, Ensembl REST API, gff3-to-json
(Thanki et al., 2016) GeneSeqToFamily: the Ensembl Compara GeneTrees pipeline as a Galaxy workflow. bioRxiv.
Earlham Institute (EI), Norwich Research Park, Norwich, UK; EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK
This research was supported in part by the NBI Computing infrastructure for Science (CiS) group.
Link to literature
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