GeneSeqToFamily specifications

Information


Unique identifier OMICS_14580
Name GeneSeqToFamily
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Coding sequences (CDS) to protein sequences, a species tree, gene feature information in JSON format
Input format JSON
Operating system Unix/Linux, Mac OS, Windows
Programming languages Javascript, Perl, Python
Computer skills Advanced
Stability Stable
Requirements Transeq, Filter by FASTA IDs, BLAST, BLAST parser, hcluster_sg, hcluster_sg parser, T-Coffee, Tranalign, TreeBeST, Gene Alignment, Family Aggregator (GAFA), cut, Ensembl REST API, gff3-to-json
Maintained Yes

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Maintainer


  • person_outline Anil Thanki <>

Publication for GeneSeqToFamily

GeneSeqToFamily institution(s)
Earlham Institute (EI), Norwich Research Park, Norwich, UK; EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK
GeneSeqToFamily funding source(s)
This research was supported in part by the NBI Computing infrastructure for Science (CiS) group.

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