GeneSeqToFamily specifications

Unique identifier:
OMICS_14580
Interface:
Command line interface
Input data:
Coding sequences (CDS) to protein sequences, a species tree, gene feature information in JSON format
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Requirements:
Transeq, Filter by FASTA IDs, BLAST, BLAST parser, hcluster_sg, hcluster_sg parser, T-Coffee, Tranalign, TreeBeST, Gene Alignment, Family Aggregator (GAFA), cut, Ensembl REST API, gff3-to-json
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
JSON
Programming languages:
Javascript, Perl, Python
Stability:
Stable
Maintained:
Yes

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GeneSeqToFamily distribution

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GeneSeqToFamily support

Maintainer

  • Anil Thanki <>

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Publications

Institution(s)

Earlham Institute (EI), Norwich Research Park, Norwich, UK; EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK

Funding source(s)

This research was supported in part by the NBI Computing infrastructure for Science (CiS) group.

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