GeneSet2miRNA statistics

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Tool usage distribution map

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Associated diseases

Associated diseases

GeneSet2miRNA specifications

Information


Unique identifier OMICS_27310
Name GeneSet2miRNA
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Caenorhabditis elegans
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Maintainer


  • person_outline Alexey Antonov <>

Publication for GeneSet2miRNA

GeneSet2miRNA in publications

 (5)
PMCID: 4233952
PMID: 25155964
DOI: 10.1002/art.38849

[…] panther classification system web tool (www.pantherdb.org) and david functional annotation clustering (). predicted mirna targets of rapidly turned over chondrocyte mrnas were identified using the geneset2mirna function within the www.bioprofiling.de web portal ()., cartilage was dissected from the femoral surface of osteochondral tissue obtained following total knee arthroplasty. tissue […]

PMCID: 3848857
PMID: 24267745
DOI: 10.1186/1471-2105-14-S12-S1

[…] such as david [] and genemania [] that employ the available gene annotations have been developed to identify the enriched gene annotations (go, pathways) in a list of genes of particular interest, geneset2mirna [] and expression2kinases [] are used to discover enriched mirnas in gene sets. a comprehensive comparison among 68 enrichment tools [] identified three major trends in enrichment […]

PMCID: 3592801
PMID: 23520522
DOI: 10.1371/journal.pone.0058586

[…] and pathogenesis., hiv-1 isolate #169b1a12, #169b1c4, and #169b1d7 are from the same patient., represents seed matches which are in the reverse complementary strand., we used the program “geneset2mirna” to identify potential micrornas that could impact the activities of the proteins whose expression had been shown to be dysregulated in hiv-infected rh9 t-cells , . for example, […]

PMCID: 3606436
PMID: 23339438
DOI: 10.1186/1687-4153-2013-3

[…] that mirna-9 has the highest coefficient and mirna-27b ranked second. we compared the enrichment results of the proposed model with fisher test and hypergeometric test and two mirna enrichment tools geneset2mirna [] and expression2kinases []. the results of our method demonstrated that it is able to infer correct mirnas from gene lists downregulated after pre-mirna treatment and it can better […]

PMCID: 3338703
PMID: 22558167
DOI: 10.1371/journal.pone.0035561

[…] online tools. to search for a putative promoter sequence upstream of (pri-mir-6165) gene, promoter 2.0 prediction server (http://www.cbs.dtu.dk/services/promoter/) was employed . diana-mirpath and geneset2mirna online tools used to find the pathways in which mir-6165 is involved. to search for the co-expression of mirna target genes with mirna host gene, genemania online tool was used. gene […]


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GeneSet2miRNA institution(s)
Helmholtz Zentrum Munchen - German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Neuherberg, Germany; Department of Genome-Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universitat Munchen, Freising, Germany

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