GeNESiS specifications

Information


Unique identifier OMICS_20013
Name GeNESiS
Alternative name Gene Network Evolution SImulation Software
Software type Framework/Library
Interface Graphical user interface
Restrictions to use None
Input data Some proteins.
Operating system Unix/Linux
Programming languages C, Java
License GNU General Public License version 3.0
Computer skills Medium
Version 1.1
Stability Stable
Requirements
GNU Scientific Library, PGAPACK, GraphViz, OpenMPI, MPICH
Maintained Yes

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Versioning


No version available

Documentation


Maintainers


  • person_outline Arun Krishnan
  • person_outline Anton Kratz
  • person_outline Masaru Tomita

Publication for Gene Network Evolution SImulation Software

GeNESiS citation

library_books

GeNESiS: gene network evolution simulation software

2008
BMC Bioinformatics
PMCID: 2640387
PMID: 19087333
DOI: 10.1186/1471-2105-9-541

[…] al selection operates on phenotypes, thereby accommodating variation in the genotype by fixing those changes that are phenotype-neutral.In this work, we introduce a parallel software package GeNESiS (Gene Network Evolution SImulation Software) that implements the framework developed in [] for studying the evolution of GRNs. […]

GeNESiS institution(s)
Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata-ken, Japan

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