GenESP specifications

Information


Unique identifier OMICS_19980
Name GenESP
Software type Application/Script
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Andrew I. Su

GenESP citations

 (2)
library_books

Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case

2014
BMC Plant Biol
PMCID: 4274702
PMID: 25476999
DOI: 10.1186/s12870-014-0329-9

[…] will be high only if Terms(P1,g) covers the biological functionalities of Terms(P2,g) and vice versa. Finally, the overall similarity between P1 and P2 is the average gene-wise similarity:SimP1,P2=∑g∈GenesP∪GenesP2rmaxaP1,P2,gGenesP∪GenesP2 […]

library_books

miR 191 and miR 135 are required for long lasting spine remodeling associated with synaptic long term depression

2014
Nat Commun
PMCID: 3951436
PMID: 24535612
DOI: 10.1038/ncomms4263

[…] re were three sets of GO terms: biological process (BP), molecular function (MF), and cellular component (CC). Equation 2Conditional Hypergeometric test of a GO term annotating the over - represented genesp−valueGO_term=(m11+m21m11)(m12+m22m12)(m11+m12+m21+m22m11+m12),where[genes in the test groupother genesmapped genesm11m12not mapped genesm21m22]m11 = the number of over-represented genes in the […]

GenESP institution(s)
The Scripps Research Institute, Department of Molecular and Experimental Medicine, La Jolla, CA, USA

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