Genestack specifications

Information


Unique identifier OMICS_01218
Name Genestack
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Parallelization MapReduce
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes

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Maintainer


  • person_outline Genestack Team <>

Genestack in publications

 (4)
PMCID: 5856258
PMID: 29547649
DOI: 10.1371/journal.pone.0185706

[…] at this stage involved an enrichment qpcr (pre-captured vs. post-captured material) and another bioanalayzer run to confirm the library size and concentration. sequencing results were transferred to genestack for analysis., data for 218 (91 abpa, 127 asthmatic) individuals was analyzed by genestack. the minimal underlying data set necessary for replication of the study are included in the paper […]

PMCID: 5780349
PMID: 29403478
DOI: 10.3389/fimmu.2017.01997

[…] school of medicine, united states, reviewed by: joshua j. obar, dartmouth college, united states; maryam dadar, razi vaccine and serum research institute, iran, †present address: misha kapushesky, genestack limited, cambridge, united kingdom, specialty section: this article was submitted to microbial immunology, a section of the journal frontiers in immunology, the transition from commensalism […]

PMCID: 5726313
PMID: 29231921
DOI: 10.1038/sdata.2017.185

[…] the expression atlas (https://www.ebi.ac.uk/gxa/home), or commercial tools like the nextbio basespace correlation engine (https://www.nextbio.com), genevestigator (https://www.genevestigator.com) or genestack (https://www.genestack.com)., although dna microarrays are still widely used, rna-seq by next generation sequencing (ngs) is now the technology of choice for ‘transcriptome wide’ gene […]


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