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Genestack specifications
Information
| Unique identifier | OMICS_01218 |
|---|---|
| Name | Genestack |
| Software type | Framework/Library |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Parallelization | MapReduce |
| Computer skills | Advanced |
| Stability | Stable |
| High performance computing | Yes |
| Maintained | Yes |
Versioning
No version available
Maintainer
- person_outline Genestack Team
Genestack citations
(2)Mutations in EEA1 are associated with allergic bronchopulmonary aspergillosis and affect phagocytosis of Aspergillus fumigatus by human macrophages
[…] at this stage involved an enrichment qPCR (pre-captured vs. post-captured material) and another bioanalayzer run to confirm the library size and concentration. Sequencing results were transferred to Genestack for analysis.Data for 218 (91 ABPA, 127 asthmatic) individuals was analyzed by Genestack. The minimal underlying data set necessary for replication of the study are included in the paper and […]
An RNA Seq atlas of gene expression in mouse and rat normal tissues
[…] the Expression Atlas (https://www.ebi.ac.uk/gxa/home), or commercial tools like the nextbio BaseSpace Correlation Engine (https://www.nextbio.com), Genevestigator (https://www.genevestigator.com) or Genestack (https://www.genestack.com).Although DNA microarrays are still widely used, RNA-Seq by next generation sequencing (NGS) is now the technology of choice for ‘transcriptome wide’ gene expressi […]
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