GeneTack statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

GeneTack specifications

Information


Unique identifier OMICS_01540
Name GeneTack
Restrictions to use None
Maintained Yes

Publication for GeneTack

GeneTack citations

 (4)
library_books

Complete genome sequence of Leuconostoc gelidum subsp. gasicomitatum KG16 1, isolated from vacuum packaged vegetable sausages

2016
Stand Genomic Sci
PMCID: 4895993
PMID: 27274361
DOI: 10.1186/s40793-016-0164-8

[…] ects erroneously predicted translational start sites, broken and missing genes, was applied. To identify putative pseudogenes and possible sequencing errors, frameshift prediction was performed using GeneTack program [] and similarity searches with proteomes of closely related species using Exonerate []. Bacteriocins and prophage regions were predicted with the help of BAGEL2 [] and PHAST [] progr […]

library_books

Identification of the nature of reading frame transitions observed in prokaryotic genomes

2013
Nucleic Acids Res
PMCID: 3711429
PMID: 23649834
DOI: 10.1093/nar/gkt274

[…] and 1029 bacterial; see for information on phylogenetic diversity) from the NCBI Web site ftp://ftp.ncbi.nih.gov/genomes/Bacteria/all.gbk.tar.gz (on 12 April 2010; draft genomes were excluded). The GeneTack-GM software program () with default settings was used to screen all the sequences; 206 991 frameshifts were predicted. The number of predicted frameshifts in a given genome has shown correlat […]

call_split

Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi

2012
Front Microbiol
PMCID: 3362086
PMID: 22661972
DOI: 10.3389/fmicb.2012.00185
call_split See protocol

[…] al., ). PCR products covering gaps between contigs were obtained by following suggestions from paired-end reads or by combinatorial PCR and were sequenced. Potential frame shifts were predicted using GeneTack (Antonov and Borodovsky, ) and either confirmed or corrected after resequencing or were modified after re-examining and editing the original assembly. The genome was annotated using a pipelin […]

library_books

Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi

2011
BMC Genomics
PMCID: 3074555
PMID: 21435244
DOI: 10.1186/1471-2164-12-161

[…] e germinated spore cDNA libraries and provided the corresponding sequences. WZ performed adjustments to and all runs of GeneMarkS and subsequent analysis. IA performed frameshift prediction using the GeneTack program and further BLASTP validation. MB developed a strategy of analysis and edited the manuscript. TE and YA developed the techniques to induce teliospore formation and teliospore germinat […]

Citations

Looking to check out a full list of citations?

GeneTack institution(s)
School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, GA, USA
GeneTack funding source(s)
The USA National Institute of Health grant [HG000783]; Wellcome Trust grant [094423]

GeneTack reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review GeneTack