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Publication for GeneTack
Complete genome sequence of Leuconostoc gelidum subsp. gasicomitatum KG16 1, isolated from vacuum packaged vegetable sausages
[…] ects erroneously predicted translational start sites, broken and missing genes, was applied. To identify putative pseudogenes and possible sequencing errors, frameshift prediction was performed using GeneTack program  and similarity searches with proteomes of closely related species using Exonerate . Bacteriocins and prophage regions were predicted with the help of BAGEL2  and PHAST  progr […]
Identification of the nature of reading frame transitions observed in prokaryotic genomes
[…] and 1029 bacterial; see for information on phylogenetic diversity) from the NCBI Web site ftp://ftp.ncbi.nih.gov/genomes/Bacteria/all.gbk.tar.gz (on 12 April 2010; draft genomes were excluded). The GeneTack-GM software program () with default settings was used to screen all the sequences; 206 991 frameshifts were predicted. The number of predicted frameshifts in a given genome has shown correlat […]
Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi
[…] al., ). PCR products covering gaps between contigs were obtained by following suggestions from paired-end reads or by combinatorial PCR and were sequenced. Potential frame shifts were predicted using GeneTack (Antonov and Borodovsky, ) and either confirmed or corrected after resequencing or were modified after re-examining and editing the original assembly. The genome was annotated using a pipelin […]
Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi
[…] e germinated spore cDNA libraries and provided the corresponding sequences. WZ performed adjustments to and all runs of GeneMarkS and subsequent analysis. IA performed frameshift prediction using the GeneTack program and further BLASTP validation. MB developed a strategy of analysis and edited the manuscript. TE and YA developed the techniques to induce teliospore formation and teliospore germinat […]
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